Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., excinuclease ABC, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  770 bits (1989), Expect = 0.0
 Identities = 394/669 (58%), Positives = 494/669 (73%), Gaps = 18/669 (2%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTII 62
           + F + + ++PAGDQPTAI +L EG+  G   Q LLG TG+GKTFT+A VI   QRP II
Sbjct: 23  RMFRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAII 82

Query: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122
           LAPNKTLAAQLYGE K FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEK++ +N  I++M
Sbjct: 83  LAPNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRM 142

Query: 123 RLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYS 182
           R SAT+ALLER D +IVASVS IYG+G  ++Y  M   L  G   +QR ++  L   QY 
Sbjct: 143 RHSATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYR 202

Query: 183 RNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARF 242
           RND  F+RG FRVRG+ ++I+PA  +  A++   F +E+E I+ FDPLTG   +  L R 
Sbjct: 203 RNDAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGE-KADTLDRI 261

Query: 243 TIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELG 302
            IY  +HYVTPR  + +AI  IK EL++R   L+   KLLE QR+ QRT FDIEM+   G
Sbjct: 262 RIYANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATG 321

Query: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETL 362
            C+GIENYSRYL+GRA GEPPPTLF+Y+P + ++  DESHV+VPQIG M+KGD  RK TL
Sbjct: 322 VCNGIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTL 381

Query: 363 VEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDP 422
            E GFRLPS +DNRPLKF+E++A+ PQ++FVSATP+ +EL ++GG   EQV+RPTGLLDP
Sbjct: 382 AEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDP 441

Query: 423 IIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDID 482
            +E+RPV  QVDDLL E R   A+  R LVTTLTKRMAEDLTEY+HE G+KVRY+HSDID
Sbjct: 442 QVEIRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDID 501

Query: 483 TVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGR 542
           T+ER+EI+RDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QT+GR
Sbjct: 502 TLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGR 561

Query: 543 AARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIME--- 599
           AARN  G+ I+YAD IT SM +A+ ET RRR KQ+AYNE+ GITP+ +K++V+D+M    
Sbjct: 562 AARNAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMAGLY 621

Query: 600 LGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
            GD+  +R          AKV +       L    LE  +  L A M + A+NLEFE AA
Sbjct: 622 QGDVDMNR--------VTAKVEKP------LHGGNLETVLEGLRADMRKAAENLEFEEAA 667

Query: 660 QKRDEIHQL 668
           + RDE+ +L
Sbjct: 668 RLRDEVKRL 676