Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 749 a.a., excinuclease ABC subunit B from Caulobacter crescentus NA1000

 Score =  791 bits (2044), Expect = 0.0
 Identities = 408/672 (60%), Positives = 506/672 (75%), Gaps = 15/672 (2%)

Query: 3   KAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTII 62
           K F+LVSDYQPAGDQPTAI +L+EGL+ G   Q LLGVTGSGKTFT+A VIA  QRP +I
Sbjct: 45  KKFKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKTFTMAQVIARTQRPALI 104

Query: 63  LAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQM 122
           LAPNKTLAAQLY EMK+FFP NAVEYFVSYYDYYQPEAYVP TDT+IEKD+S+N  I++M
Sbjct: 105 LAPNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 164

Query: 123 RLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYS 182
           R SAT+A+LER D ++VASVS IYG+G  ++Y  M   L  G  ++++ ++  L   QY 
Sbjct: 165 RHSATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQRVDEKQLIADLVAQQYK 224

Query: 183 RNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARF 242
           RND AFERG FR RG+ I+IFPA  +  A RV MF DE+E +S FD LTG  T+ DL   
Sbjct: 225 RNDQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTGKKTA-DLEMI 283

Query: 243 TIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELG 302
            +Y  +H+VTPR  + +AI  I+ EL+ R ++L  N KLLE QR+ QRT FD+EM+   G
Sbjct: 284 KVYANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTFDLEMIETTG 343

Query: 303 FCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETL 362
            C+GIENYSRYLSGR  GEPPPT F+Y+P + LL  DESH TVPQIGAM+KGDR+RK TL
Sbjct: 344 SCAGIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRNRKWTL 403

Query: 363 VEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDP 422
            E+GFRLPSALDNRPLKF+E++A+ PQ++ VSATP+ +EL ++GG  AEQV+RPTGL+DP
Sbjct: 404 AEYGFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAGGVFAEQVIRPTGLIDP 463

Query: 423 IIEVRPV----ATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLH 478
            +EVRPV    A+QVDD++ E R       R LVT LTK+MAEDLTEYL E G++VRY+H
Sbjct: 464 PVEVRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAEDLTEYLTEQGIRVRYMH 523

Query: 479 SDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQ 538
           SD+DT+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LVAILDADKEGFLRSE SLIQ
Sbjct: 524 SDVDTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQ 583

Query: 539 TMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIM 598
           T+GRAARNV+GK ILYAD +T SM +A+ ET RRREKQ AYN + GITP+ +KR +KDI+
Sbjct: 584 TIGRAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLEHGITPESVKRDIKDIL 643

Query: 599 ELGDIAKSRKQKNSKV-VPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFEL 657
                  S  ++  +V VP+     +   +   +    +  +  LEA M + A NLEFE 
Sbjct: 644 ------NSPYERGDRVLVPMGMSETDDRPF---SGDNFKAALKDLEAKMREAAANLEFET 694

Query: 658 AAQKRDEIHQLR 669
           AA+ RDEI +++
Sbjct: 695 AARLRDEIKRMK 706