Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 98/454 (21%), Positives = 184/454 (40%), Gaps = 69/454 (15%)

Query: 36  TLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSY--- 92
           TL G         +A++       T  +A +   A      +K F P      F S+   
Sbjct: 16  TLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFPSWDCL 75

Query: 93  -YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYG-LGD 150
            YD   P + V  T     + A+++      RL+  + L E K A++V +  A+   +  
Sbjct: 76  PYDRIGPSSGVSAT-----RMATLS------RLA--RGLGESKAAILVIAAPALLQRVPT 122

Query: 151 PDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQE 210
            +  L+     + G  ++ +D+ R  A   Y+R     ERG+F +RG VID++P  + +E
Sbjct: 123 KEVLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAA-EE 181

Query: 211 AVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQV 270
            VR+++F D +E I  FDP T   T + L    + P          + EA+       + 
Sbjct: 182 PVRLDLFGDTLESIRAFDPETQRST-KQLKEIDLLP----------VSEALLDADGISRF 230

Query: 271 RRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYL 330
           R+ Y+ +     ++   +         ++E G  +G+E++      R       TLFDYL
Sbjct: 231 RKGYVAEFGAPGDDALYA--------AVSEGGRRAGLEHWLPLFYERM-----ATLFDYL 277

Query: 331 PHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQT 390
           P   L+ +D                R  +  +++  +   ++ D +      +  LAP+ 
Sbjct: 278 PAGALIGVDNQATEA----------RDERLAMIQDAYDARASADRK----SAYRPLAPEA 323

Query: 391 IFVSATPSEYELT-----------KSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSE 439
           ++++A   E EL+             G +V +   +  G +      +      +     
Sbjct: 324 LYLTAEEWERELSDRTHRRFTPFQPQGLDVIDLGAK-LGRVFAAERAQDSVNLFEATADH 382

Query: 440 ARIRAANDERILVTTLTKRMAEDLTEYLHEHGVK 473
           A+  AA  +R+L  + ++  +E L   L +HG+K
Sbjct: 383 AKALAAQGKRVLFASWSEGSSERLGTMLADHGLK 416



 Score = 37.4 bits (85), Expect = 4e-06
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 461 EDLTEYLHEHGVKVRYL--HSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVAL 518
           ED+ ++L     +V+++  H  +   +  +++     G +DVL+   ++  GLD+P    
Sbjct: 829 EDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANT 888

Query: 519 VAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERR 572
           + +  AD  G  +    L Q  GR  R+   KA  YA   T   +      E+R
Sbjct: 889 LIVHRADMFGLAQ----LYQIRGRVGRS---KARAYAYLTTPVEKSLTPSAEKR 935