Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., excinuclease ABC subunit B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  729 bits (1883), Expect = 0.0
 Identities = 377/669 (56%), Positives = 489/669 (73%), Gaps = 8/669 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           FEL S Y+P GDQP AI QL EG+  G+  QTLLGVTGSGKTFT+ANVIA   +PT+IL+
Sbjct: 3   FELTSAYKPTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 62

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
            NKTLAAQLY E K FFPNNAVEY+VSYYDYYQPEAY+P +DT+IEKD ++N  I+++RL
Sbjct: 63  HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPNSDTYIEKDLAINDEIDKLRL 122

Query: 125 SATKALLE-RKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
           +AT +LL  RKD V+V+SVS IYG+G+P  + K ++ + RG ++++   LRRL +  Y R
Sbjct: 123 AATSSLLSGRKDVVVVSSVSCIYGMGNPSDFYKNVIEIERGRMLDRNVFLRRLVDSLYVR 182

Query: 184 NDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFT 243
           ND+   RG FRV+G+ +DIF A SD   +RV  + DEI+ I   DP+TGV T+     + 
Sbjct: 183 NDIDLNRGNFRVKGDTVDIFLAYSDT-LLRVTFWGDEIDGIEEVDPITGVTTA-PFEAYK 240

Query: 244 IYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF 303
           IYP   ++T +E  L AI +I+ +L  +  +     K  E +R+ +R  +D+EM+ ELG 
Sbjct: 241 IYPANLFMTTKEATLRAIHEIEDDLTKQVAFFESIGKEYEAKRLYERVTYDMEMIRELGH 300

Query: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 363
           CSGIENYSRY  GRA G  P  L D+ P D LL+IDESHV+VPQ+ AM+ GDR+RK  LV
Sbjct: 301 CSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLLVIDESHVSVPQVRAMYGGDRARKINLV 360

Query: 364 EFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPI 423
           E+GFRLP+A+DNRPLKF+EFE +  Q I+VSATP+EYEL +S G V EQV+RPTGLLDP+
Sbjct: 361 EYGFRLPAAMDNRPLKFEEFEEMTKQVIYVSATPAEYELIQSEGIVVEQVIRPTGLLDPV 420

Query: 424 IEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDT 483
           IEVRP   Q+DDL+ E ++R   +ER+LVTTLTKRMAE+LTEYL  + V+  Y+HSD+DT
Sbjct: 421 IEVRPSLNQIDDLMEEIQLRIEKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDT 480

Query: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRA 543
           +ERV+I+ DLR GV+DVL+G+NLLREGLD+PEV+LVAILDADKEGFLRS RSL QT GRA
Sbjct: 481 LERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA 540

Query: 544 ARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELG-- 601
           ARNVNGK I+YAD IT SMR  IDET RRREKQLAYNE  GITPQ +K++ +++   G  
Sbjct: 541 ARNVNGKVIMYADKITDSMRLTIDETNRRREKQLAYNEANGITPQQIKKA-RNLSVFGSP 599

Query: 602 --DIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAA 659
             +  +  K+K++ V P +         Q ++  Q+EK I +    M + A+ LEF  AA
Sbjct: 600 GSEADELLKEKHAYVEPSSPNIAADPIVQYMSKAQMEKSIERTRKLMQEAAKKLEFIEAA 659

Query: 660 QKRDEIHQL 668
           Q R+E+ +L
Sbjct: 660 QYRNELLKL 668