Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., excinuclease ABC subunit B from Burkholderia phytofirmans PsJN

 Score =  686 bits (1771), Expect = 0.0
 Identities = 350/669 (52%), Positives = 465/669 (69%), Gaps = 17/669 (2%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F L S Y PAGDQP AI +L+EG+E G  HQTL G+TGSGKTFT+ANVI    RPT++LA
Sbjct: 6   FILHSAYTPAGDQPEAIARLIEGIEEGAKHQTLKGITGSGKTFTMANVIHRLNRPTLMLA 65

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTL AQLY EMK FFP NAVE+FVSYYD++QPE Y+P +D FI+KD+++N H+E++RL
Sbjct: 66  PNKTLTAQLYEEMKQFFPENAVEFFVSYYDFFQPEVYMPGSDRFIQKDSAINDHLERLRL 125

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           S TK+L+ER+D ++VASVS+IYGLGDP+ Y ++ + L RG     R+++RRL  LQY R 
Sbjct: 126 STTKSLIERRDVIVVASVSSIYGLGDPNGYRELQIALSRGISFRPRELIRRLVRLQYERV 185

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           +   +RG FRVRG+ +DIFPA+S+  AVRVE+ DD ++ +   DP TG     ++  + +
Sbjct: 186 ERTLKRGTFRVRGDAVDIFPADSEYRAVRVELLDDSVQSVHWIDPATGAQLG-EIDHYLV 244

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
            PKT + TPR R+  A  +I +E++ R   L   N+L+E  R+ +R   D+EMM ELG+C
Sbjct: 245 SPKTLFATPRNRVNSATIKILAEMEARVAELNSENRLVEADRLYERITGDVEMMRELGYC 304

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
            G+ENYS YL+GR    PP TL DYLP DGLL +DESHV VPQI AM+KGD+SRK+TL++
Sbjct: 305 PGMENYSCYLNGRDPALPPNTLLDYLPTDGLLFVDESHVMVPQISAMYKGDQSRKDTLID 364

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPS+ +NRPL F+EFE + PQTIFVSATP  YEL  S G    Q++RPTGLLDP +
Sbjct: 365 YGFRLPSSKNNRPLSFEEFEKVKPQTIFVSATPGNYELAISKGRFVSQIIRPTGLLDPEV 424

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVR     +DDLL E +    N  R+LVTTLTKR AE+L +++ E G++ RYLH+DI T 
Sbjct: 425 EVRTTDGCIDDLLVEIKKCVKNKNRVLVTTLTKRAAEELNDFMTERGIRSRYLHADIKTE 484

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           +R+EII  LR G FDVL+GI+LLREGLD+PE ALVAILDAD  GFLRS ++LIQ +GR A
Sbjct: 485 DRIEIINGLREGEFDVLIGISLLREGLDIPEAALVAILDADHAGFLRSAQALIQMIGRVA 544

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RN  G+AILYAD IT +M++A+DET  RR+KQ+ +NE+ GI P                +
Sbjct: 545 RNEEGRAILYADGITPAMKQAMDETGSRRKKQIEFNEENGIVP---------------AS 589

Query: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664
             RK  +  V P    +  S A+       L  +I+K E  + +     + +     RD+
Sbjct: 590 SVRKLASEHVEPEENASVHSVAF-CKNLSDLCDQITKKEERLLEFTDAGDEKKIEDTRDQ 648

Query: 665 IHQLRQQFI 673
           ++ L +QFI
Sbjct: 649 LNGLYRQFI 657