Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  979 bits (2531), Expect = 0.0
 Identities = 501/669 (74%), Positives = 569/669 (85%), Gaps = 3/669 (0%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+L S + PAGDQPTAI +L++GLE+GLA QTLLGVTGSGKTFT+ANVIA   RPTII+A
Sbjct: 6   FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRPTIIMA 65

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGEMK FFPNNAVEYFVSYYDYYQPEAYVP ++TFIEKDASVNAHIEQMRL
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATKALLERKD V++ASVSAIYGLGDPDSY+KM+LHLR+GD + QRD+L+RL+ELQY+RN
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSELQYTRN 185

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           D+  +RG FR RGEVIDIFPA+SD+  +RVE+FDDEIE +S FDPLTG I  R +AR T+
Sbjct: 186 DLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKR-IARTTV 244

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YPKTHYVTPRE+ILEA E IK EL+ R+QYLLDNNKL+E QRI +R Q+DIEMM ELG+C
Sbjct: 245 YPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGYC 304

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           SGIENYSRYLSGRA GE PPTL DYLP DGLLIIDESHVTVPQIGAM+KGDRSRK TLVE
Sbjct: 305 SGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKTTLVE 364

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPSALDNRPLKF+EFE L PQTI+VSATP+ YEL KSGGE+ EQVVRPTGLLDP +
Sbjct: 365 YGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLLDPEL 424

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           EVRPV+ QVDDLLSE   R A +ER+LVTTLTKRM+EDLTEYL EHGVKVRYLHSDIDTV
Sbjct: 425 EVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTV 484

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LV ILDADKEGFLRSERSLIQT+GRAA
Sbjct: 485 ERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAA 544

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RNVNGK ILYAD IT+SM KA+ ETERRREKQ AYN + GI P+ + + + D+M++ D  
Sbjct: 545 RNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMDVDDGR 604

Query: 605 KSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDE 664
            +  +K      L KVAE  A        QL  +I KLE  M++HA+NLEFE AA  RDE
Sbjct: 605 DT--EKGYSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDE 662

Query: 665 IHQLRQQFI 673
           + +LR+  I
Sbjct: 663 VKRLRELLI 671