Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM 161
           ++E+ CIGC KC++ACP   I    + +   +   C  C LCV  CP + I +
Sbjct: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246



 Score = 49.3 bits (116), Expect = 9e-11
 Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 103 VKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVH---------TVIKNECTGCDLCVAP 153
           ++ +A I  D CI CT C Q CP +AI    K            TV + EC GC+ CV  
Sbjct: 149 IEDIAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEA 208

Query: 154 CPTDCIE 160
           CP   IE
Sbjct: 209 CPGSMIE 215



 Score = 39.3 bits (90), Expect = 9e-08
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 114 CIGCTKCIQACPVDAIVGGNKAVHT-----------VIKNECTGCDLCVAPCPTDCIEM 161
           C+ C KC++ CP + I    KA               +  +C  C +CV  CP D I +
Sbjct: 91  CVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAISI 149



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 114 CIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCI 159
           C+ C  C+  CPVDAI   + AV  +  ++C  C +C   CP + I
Sbjct: 132 CVACGVCVPECPVDAISIEDIAV--IDTDKCIYCTVCSQTCPWNAI 175



 Score = 36.6 bits (83), Expect = 6e-07
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCI 159
           I ED C+ C  C +ACP +AI              C  C  C   CPT  +
Sbjct: 6   IQEDACLVCNACAKACPTEAI-------EIAPFKTCIQCFSCATACPTGAL 49



 Score = 33.5 bits (75), Expect = 5e-06
 Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 35/137 (25%)

Query: 33  ADPIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGGQATIEKLADLMGVEV 92
           A P+ D+   +  + +C  CG                  KCP G      K+ +  G+E 
Sbjct: 253 AKPVTDE-GLVWSEEKCAYCG--------------PCAIKCPTGAI----KVVNPKGLE- 292

Query: 93  QDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNE--------C 144
                 L +K K        MCI C  C   CP  A+  G K VH   +          C
Sbjct: 293 ------LPSKKKTEKANEFAMCIRCGACAMKCPTGALKMG-KMVHEGKEYARVEFSPALC 345

Query: 145 TGCDLCVAPCPTDCIEM 161
             C  CV  CP   +E+
Sbjct: 346 NECGECVDVCPQKTLEL 362



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 120 CIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM 161
           C +ACPV      ++  ++  K  C  C+ CV  CP + I +
Sbjct: 69  CQKACPVGIKKVDDRFPYS--KGHCVLCEKCVEICPAEIISL 108



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 24/67 (35%)

Query: 60  YAEAIAN--GDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGC 117
           ++ A+ N  G+ ++ CP       +K  +L G          D+K+ +  +     C+ C
Sbjct: 340 FSPALCNECGECVDVCP-------QKTLELTG----------DDKMPLKGY-----CVMC 377

Query: 118 TKCIQAC 124
            KCI+AC
Sbjct: 378 LKCIEAC 384