Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 67  GDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMV-AFIHEDMCIGCTKCIQACP 125
           G+ +  CP      +E     MG   +++   L N  K++   I E++C+ C  C  ACP
Sbjct: 88  GNCVESCPTN---VLE-----MGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACP 139

Query: 126 VDAIVGGNKAVHTVIKNECTGCDLCVAPCPTD 157
           VDAI   N  ++ +  N C  C  C+  CP +
Sbjct: 140 VDAISHNNTGLYEIDVNLCVSCKNCLKACPVE 171



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 106 VAFIHEDMCIGCTKCIQACPVDAI-----VGGNKAVHTVIKNECTGCDLCVAPCPTDCIE 160
           V F   + CI C+ C ++CP DAI         K +       C  C  CV  CPT+ +E
Sbjct: 41  VIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLE 100

Query: 161 MIPVQTTPESWKWQLNAI 178
           M  ++   +   W +  I
Sbjct: 101 MGTLRKEAKELLWNVPKI 118



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNE--CTGCDLCVAPCPTDCIEMIPVQT 166
           + E+ CIGC  C ++C V   +  +K  +    N   C  C LC   CP D I+ +  +T
Sbjct: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKTET 337

Query: 167 TPE 169
           + +
Sbjct: 338 SED 340



 Score = 32.3 bits (72), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 113 MCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM-IPVQTT 167
           +CIGC  C+  CP      G+  +  +    C     C+  CPT  I + +P + T
Sbjct: 220 LCIGCGNCVDVCP------GSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKIT 269



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 99  LDNKVKMVAFIHEDMCIGCTKCIQACPVDAI 129
           L +K   + +I+ + C+ C  C  ACPVDAI
Sbjct: 300 LISKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 33/80 (41%)

Query: 109 IHEDMCIGCTKCIQACPVD-AIVGGNKA-------------------------------- 135
           I  ++C+ C  C++ACPV+ AIV  ++                                 
Sbjct: 153 IDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAE 212

Query: 136 VHTVIKNECTGCDLCVAPCP 155
           +  ++ + C GC  CV  CP
Sbjct: 213 IPRIVPSLCIGCGNCVDVCP 232