Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 50.4 bits (119), Expect = 3e-11
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 78  QATIEKLADLMGVE---VQDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGN- 133
           Q  I  ++  +G++   V++   DL   V+   ++  + CI C  C + CPVDAI   + 
Sbjct: 9   QKIISDISKNLGIDEKFVKEKLKDLMVPVERNLYVESNKCIRCELCYEVCPVDAIKEPSV 68

Query: 134 KAVHTVIKNECTGCDLCVAPCPTDCIEMI 162
           K+   +I  +C  C++C   CP   I ++
Sbjct: 69  KSPAEIIPEKCVKCEICAKTCPVGAINVL 97



 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 73  CPPGGQATIEKLADLMGVEVQDSAHDLD---NKVKMVAF-IHEDMCIGCTKCIQACPVDA 128
           CP G    +E  A L    V     ++D    K+++V   + E+ CI C  C + CP  A
Sbjct: 89  CPVGAINVLEGRAKLEEDTVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSA 148

Query: 129 IVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM 161
           I    +    +  + C GC  C   CP   I++
Sbjct: 149 ITVEKRNSIDINLDLCMGCTACEKVCPKSAIKV 181



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNE-------CTGCDLCVAPCPTDCI 159
           I+ D+C+GCT C + CP  AI   N+      +NE       C  C +C   CP   I
Sbjct: 159 INLDLCMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAI 216



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 28/153 (18%)

Query: 28  RFKVEADPIVDQIDAI-------------LPQTQCGQCGYPGCRPYAEAIA------NGD 68
           R K+E D +V ++  I             L +  C +CG   C  +    A      N  
Sbjct: 100 RAKLEEDTVVYELKEIDVTHRKIRLVKHELDEESCIKCGI--CERFCPTSAITVEKRNSI 157

Query: 69  AINKCPPGGQATIEKLADLMGVEVQDSAHDL--DNKVKMVAFIHEDMCIGCTKCIQACPV 126
            IN     G    EK+     ++V++   ++  +N++ +    + D CI C  C + CPV
Sbjct: 158 DINLDLCMGCTACEKVCPKSAIKVENEMGEITAENEISL----NNDTCINCMVCSEICPV 213

Query: 127 DAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCI 159
            AIV     +  +    C  C  C   CP   I
Sbjct: 214 GAIV-YEDGLMKLDDKMCIFCGKCEKNCPVTAI 245



 Score = 29.3 bits (64), Expect = 6e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 139 VIKNECTGCDLCVAPCPTDCIEMIPVQTTPE 169
           V  N+C  C+LC   CP D I+   V++  E
Sbjct: 43  VESNKCIRCELCYEVCPVDAIKEPSVKSPAE 73