Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTP 168
           +  D+CIGC  C   CP D IV        V    C  C LC+A CP D IE++    +P
Sbjct: 198 VDSDLCIGCGDCTDKCPRDLIVLNEMVA--VPPKGCPACGLCMAACPVDAIELVVEYGSP 255

Query: 169 E 169
           +
Sbjct: 256 K 256



 Score = 43.9 bits (102), Expect = 4e-09
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 13/60 (21%)

Query: 114 CIGCTKCIQACPVDAIVGGNKAVHTVIKN------------ECTGCDLCVAPCPTDCIEM 161
           C+GC KC++ACP D  VG    V    +N            +C GC +C++ CP   + +
Sbjct: 94  CVGCMKCVEACP-DDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSI 152



 Score = 40.4 bits (93), Expect = 4e-08
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 113 MCIGCTKCIQACPVDAIVGGNKAVH--------TVIKNECTGCDLCVAPCPTDCIEM 161
           MCI C  C+Q+CP DA+  G K +H            N C  C  C+  CP D + +
Sbjct: 309 MCIRCGACVQSCPNDALRIG-KIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNL 364



 Score = 39.3 bits (90), Expect = 9e-08
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 12/70 (17%)

Query: 107 AFIHEDMCIGCTKCIQACPVDAI-VGGNKA--------VHTVIKNECTGCDLCVAPCPTD 157
           A + ++ CI C+ C Q CP +AI V G K+          +V  + C GC  C   CP D
Sbjct: 157 AVVDKNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRD 216

Query: 158 CI---EMIPV 164
            I   EM+ V
Sbjct: 217 LIVLNEMVAV 226



 Score = 37.0 bits (84), Expect = 5e-07
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 67  GDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKCIQACPV 126
           G+ +N CP           +L  +E+          +K + +     C  C +C++ CP 
Sbjct: 36  GNCVNACP-------NDALNLREIELNGKT------IKQIEYF-PTKCDLCGECVKVCPN 81

Query: 127 DAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEM 161
           +  +  +K     +K  C GC  CV  CP D + M
Sbjct: 82  NLKIENDK-----LKGFCVGCMKCVEACPDDYVGM 111



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 32/141 (22%)

Query: 35  PIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGG----------QATIEKL 84
           PI D+   +  + +C  CG     P A    N +AIN   P G          +A   K+
Sbjct: 257 PITDE-GIVWDEEKCAYCG-----PCAIKCPN-NAINVVNPKGLEMPSRKKTEKANEFKM 309

Query: 85  ADLMGVEVQDSAHDLDNKVKMVAFIHE-----------DMCIGCTKCIQACPVDAIVGGN 133
               G  VQ   +D    +++   IH+           ++C  C KCI+ CP D +    
Sbjct: 310 CIRCGACVQSCPNDA---LRIGKIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNLTG 366

Query: 134 KAVHTVIKNECTGCDLCVAPC 154
           K     ++  C  C  C+  C
Sbjct: 367 KP-EKPLEGFCVMCLKCIEAC 386



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTP 168
           I+ + C  C  C  +CP +A+      V       C  C  CV  CP D + +  ++   
Sbjct: 4   INTEDCYMCKACENSCPTEALKLNPFKV-------CQLCGNCVNACPNDALNLREIELNG 56

Query: 169 ESWK 172
           ++ K
Sbjct: 57  KTIK 60



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 113 MCIGCTKCIQACPVDA-----IVGGNKAVHTV--IKNECTGCDLCVAPCPTD 157
           +C  C  C+ ACP DA     I    K +  +     +C  C  CV  CP +
Sbjct: 31  VCQLCGNCVNACPNDALNLREIELNGKTIKQIEYFPTKCDLCGECVKVCPNN 82