Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 96.3 bits (238), Expect = 5e-25
 Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 29/190 (15%)

Query: 4   IVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPYAEA 63
           + ++VI L  L  V  ++L  AS  F VE DP V+ +  +LP   CG CGY GC  YA A
Sbjct: 2   VTLSVITLLGLGLVTASVLAVASRVFYVEEDPRVEAVLEVLPGANCGGCGYAGCEGYATA 61

Query: 64  IANGDAI--NKCPPGGQATIEKLADLMGVEVQDS--------AHDLDNKV---------- 103
           + N   I  N+C  GG+ T   + +L G  V  S           +  KV          
Sbjct: 62  VVNDPDIPANRCCAGGELTSIAVGELTGKTVAASEPQRSFRRCDKVSGKVLSRYAYQGVP 121

Query: 104 ----KMVAFIHED----MCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCP 155
                 + F   D     C+G   C++ CP DA+   N   H  +  +CTGC +C+  CP
Sbjct: 122 SCAAAALLFDGSDSCSYSCLGLGDCVEVCPFDALHIENGLTHVDLA-KCTGCGVCINACP 180

Query: 156 TDCIEMIPVQ 165
            + +E+IPV+
Sbjct: 181 RNTLELIPVR 190



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 61  AEAIANGDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDNKVKMVAFIHEDMCIGCTKC 120
           A+    G  IN CP   + T+E +     V V  S  +   K+K V  + E  CI C KC
Sbjct: 167 AKCTGCGVCINACP---RNTLELIPVRARVAVMCSTKE---KLKAVMEVCEVGCINCGKC 220

Query: 121 IQACPVDAIVGGNKAVHTVIKNECTGC-----DLCVAPCPTDCI-EMIPVQTTPES 170
           ++ACP  AI      +  + + +C        + CV  CP + +  M PV    E+
Sbjct: 221 VKACPAHAISQETGRIE-IDQKKCLSYGPDCNEACVTACPRNIMRHMCPVYLAQET 275