Pairwise Alignments

Query, 195 a.a., electron transport complex subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  106 bits (265), Expect = 4e-28
 Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 29/192 (15%)

Query: 1   MSTIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPY 60
           M+ I+IAVI+L A+A V  AIL  AS +F V  DP + Q+  +LPQ  CG CGYPGC  +
Sbjct: 1   MNLILIAVISLGAIALVLAAILYVASKKFAVYEDPRIAQVGEVLPQANCGGCGYPGCSGF 60

Query: 61  AEAIANGDAINK--CPPGGQATIEKLADLMGVEVQD--------------------SAHD 98
           A+A     +++   CP GGQ  + ++AD++G+   +                    + +D
Sbjct: 61  ADACVKAGSLDGKFCPVGGQPVMAQIADILGLAATEAEPMVAVVRCNGSCANRPRINQYD 120

Query: 99  LDNKVKMVAFIHEDM------CIGCTKCIQACPVDAI-VGGNKAVHTVIKNECTGCDLCV 151
                 + A ++         C+GC  C+ AC  DAI +     +  V + +CT C  CV
Sbjct: 121 GAKSCAIAASLYGGETGCSYGCLGCGDCVAACQFDAIHMNPETGLPEVDEAKCTACGACV 180

Query: 152 APCPTDCIEMIP 163
             CP   IE+ P
Sbjct: 181 KACPKAIIEIRP 192



 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 114 CIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCI 159
           CIGC KC++ CP +AI   N   + +  N+C  C  CV  CP + I
Sbjct: 221 CIGCGKCVKTCPFEAITLENNLAY-IDPNKCKSCRKCVEVCPQNTI 265



 Score = 31.6 bits (70), Expect = 1e-05
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 20/72 (27%)

Query: 109 IHEDMCIGCTKCIQACPVDAIVG---------------GNKAVHTVIKNECT----GCDL 149
           + E  C  C  C++ACP  AI+                 NK    V +  CT    GC  
Sbjct: 168 VDEAKCTACGACVKACP-KAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGK 226

Query: 150 CVAPCPTDCIEM 161
           CV  CP + I +
Sbjct: 227 CVKTCPFEAITL 238



 Score = 29.6 bits (65), Expect = 6e-05
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 106 VAFIHEDMCIGCTKCIQACPVDAIV 130
           +A+I  + C  C KC++ CP + I+
Sbjct: 242 LAYIDPNKCKSCRKCVEVCPQNTII 266