Pairwise Alignments

Query, 801 a.a., electron transport complex subunit RsxC from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., electron transport complex protein RnfC (RefSeq) from Shewanella loihica PV-4

 Score =  608 bits (1568), Expect = e-178
 Identities = 376/876 (42%), Positives = 508/876 (57%), Gaps = 108/876 (12%)

Query: 28  MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVK 87
           ML+L+EQI  G LW  PGGIHP E+K  SN+  I    + +  ++P+   +G+   L VK
Sbjct: 1   MLTLLEQIDKGTLWRIPGGIHPPEHKTLSNQSKISRLPLADHYLIPVPG-VGENCTLAVK 59

Query: 88  VGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWF 147
           VGD V KGQPLT       LP+HAP SG + AIE R   H S L  L  V+  D QE+W 
Sbjct: 60  VGDTVTKGQPLTLGEGFRHLPVHAPVSGRVVAIEERASNHASALPVLTCVIENDHQEKWI 119

Query: 148 ELQPQP----DFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQSGLSRTEILIINAAEC 203
           E    P       ++  + ++  I+ AGI+G+GGA FPT  KL+  +S  E+LIIN  EC
Sbjct: 120 ESVHTPLSLEQVAEMDNDDIIRRIQSAGIAGLGGAAFPTHIKLKP-VSEIELLIINGVEC 178

Query: 204 EPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMV- 262
           EPYIT+DD LM++   EI++GIEIV  +L PK  I+ IEDNKPEAV  +  A     +  
Sbjct: 179 EPYITSDDKLMQESCDEIVRGIEIVHQLLSPKRIIVAIEDNKPEAVEQMGHALNRSQLPS 238

Query: 263 ----IRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEP 318
               +  IPT YPSGGEKQLI+ILT  EVP G IPA++G++VQNVG+  +IA+A+    P
Sbjct: 239 HCARVSKIPTLYPSGGEKQLIQILTGQEVPSGAIPANLGILVQNVGTAYSIAQAVYRNMP 298

Query: 319 LIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQ 378
           LI RVVTLTG    KP N W  +GTPV+ LL    ++ D   P +I+GGPMMG+ LP+  
Sbjct: 299 LIERVVTLTGQNIAKPGNYWVPIGTPVEHLLEVGQFRGDANAP-VIIGGPMMGYMLPNVA 357

Query: 379 VPITKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEE 438
            PITK  NC+L P+  E+     E  CIRCG+CA+ACP  LLPQQL WHAKA+E+DK   
Sbjct: 358 APITKGTNCVLMPSEQEVAPPSPEQPCIRCGECAQACPAQLLPQQLFWHAKAQEYDKAAS 417

Query: 439 LDLKDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERD 498
            +L+DCIECG C+YVCPS+IPLV+YYR AK+ +R  + E + AE AK RF+ +  R+E++
Sbjct: 418 YNLRDCIECGCCSYVCPSDIPLVEYYRVAKSALRQEAEEKKQAELAKQRFDSRTLRLEQE 477

Query: 499 KAERENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQK---AQLEPTDNSVKP--AIAA 553
           K  RE + KQAAE RRK        DA+AAA+ R++A+K   AQ      + KP   +AA
Sbjct: 478 KQAREEKAKQAAE-RRKAQMTGSDKDAVAAAMARIQAKKAAEAQASAGATTEKPQDKVAA 536

Query: 554 AIARAKAKQAEAAQSGASEPDNSEM-----------------------AKLREERKRQAR 590
           AIARAKAK+A    S  +E + SE                        A +   + ++A 
Sbjct: 537 AIARAKAKKAAQKTSSETETETSEQPASQVKGADNRESAAVSQKEKVAAAIARAKAKKAA 596

Query: 591 ERKAQKGEVTEASTSDGAD----DKKSAVAAAIARAKARKAEQ----------------- 629
           +  A   E ++A    GA+     +K  VAAAIARAKA+KA Q                 
Sbjct: 597 QDTADTTEASQAPAQQGAETAPLSQKDKVAAAIARAKAKKAAQAGANDQQAATVEHRDEP 656

Query: 630 -QETESAAQPAQA----------TPSSDDADPKKAAVAAAIARAKARKAEQQETESTAQP 678
            + T   A+P+++          T  +D A  KKA +AAAIA+AKA+KA Q +  ++ +P
Sbjct: 657 IERTGETAKPSESQSASTDDTEGTEKADAAAAKKAKIAAAIAKAKAKKA-QLDAGASDEP 715

Query: 679 AQATPSSD-DADP----KKAAVAAAIARAKARKAE--------KQETESAAQPTQATPSS 725
              TP+ D +A+     KKA +AAA+A+AKA+KA+        K E  + A+P +A  ++
Sbjct: 716 DVMTPAEDIEANSPEAIKKAKIAAAVAKAKAKKAQQAGAGDEPKAEITTDAEPAKA-EAN 774

Query: 726 DDADP------KKAAVAAAIARAKARKAEQQET--ESAAQPTQATPSSDDADP------- 770
           DDA+       KKA +AAA+A+AKA+KA Q     E  A     T   D AD        
Sbjct: 775 DDAEAGSPEAIKKAKIAAAVAKAKAKKAAQASAGDEQLAPSESQTDIEDFADAEDVADTS 834

Query: 771 -----KKAAVAAAIARAKARKAAQQSSSNLNAEEKD 801
                KKA +AAA+A+AKA+K A+  +   N E KD
Sbjct: 835 SPEAIKKAKIAAAVAKAKAKKLAKAEAETPNNEHKD 870