Pairwise Alignments

Query, 801 a.a., electron transport complex subunit RsxC from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.8 bits (133), Expect = 5e-12
 Identities = 96/444 (21%), Positives = 167/444 (37%), Gaps = 73/444 (16%)

Query: 58  RQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVI 117
           RQ I   + P+++ L  ++++G    +LV+VGD+V KGQPL +   T  +   AP SG I
Sbjct: 24  RQIIEPGNRPSQVALLGEEYVGLKPTMLVEVGDKVKKGQPLFEDKKTKGVFFTAPASGEI 83

Query: 118 SAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGI-SGMG 176
            AI          +   C  L  D+Q          D Q L+ + +   +  +G+ + + 
Sbjct: 84  VAINRGERRVLQSVVIRCNGLDADEQ---IRFDIHADLQSLSAQVVQAQLVNSGLWTALR 140

Query: 177 GAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKL 236
              F     L    S+   + + A +  P      +++ + +     G+ ++ H+   K+
Sbjct: 141 TRPFSRVPALD---SKPAGIFVTAMDTNPLAADPRLIIAEQSDAFKAGLAVLSHLTDGKV 197

Query: 237 TIIGIEDNKPEAVAALQQAAQDKPMV-IRVIPTKYPSGGEKQLIKILTNLEVPKGGIPAD 295
            +     +K EA+        D P V +R     +P+G     I            +P  
Sbjct: 198 YLC---QDKGEAL-----VGADLPKVEVRRFTGVHPAGLAGTHIHFT---------LPVS 240

Query: 296 IGLMVQNVGSLQAIA--RAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFG 353
           I   V ++G    IA  +    GE    RVV L G     PR +   LG  + AL+ +  
Sbjct: 241 IERQVWHIGYQDVIAYGKLFQTGELYTDRVVALGGPSVLNPRLLRTQLGAELSALVAD-- 298

Query: 354 YKADKKLPRLIMGGPMMGFT---------------------LPHAQVPITKTANCILAPT 392
            +      R++ G  + G T                       H  +P  +  +   + T
Sbjct: 299 -EVKSGNNRVVSGSVLSGHTAQGVHDFLGRFHNQISVLAEDAQHQVLPWVRGGSDKFSIT 357

Query: 393 RN------------ELTS--SDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCE- 437
           R             E T+    ++ A +  GQ     P+ +LP  L       + D+ + 
Sbjct: 358 RAVTSRLFGLTKSFEFTTHQGGSQRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDEAQA 417

Query: 438 ----ELDLKDCIECGACAYVCPSE 457
               ELD +D      C +VCP +
Sbjct: 418 LGALELDEED---LALCTFVCPGK 438