Pairwise Alignments

Query, 801 a.a., electron transport complex subunit RsxC from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  275 bits (703), Expect = 4e-78
 Identities = 165/434 (38%), Positives = 243/434 (55%), Gaps = 14/434 (3%)

Query: 45  GGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTST 104
           GG+HP ENK  S  QPII A +P + V+ L QHIG     +V  GD V  G  + +    
Sbjct: 8   GGVHPHENK-LSAHQPIITAEVPAKAVILLGQHIGAPAKPIVAKGDMVKVGTKIAEPAGF 66

Query: 105 FMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQ----QLTP 160
               IH+  SG ++ I+  TV   SG ++  I +  +  +EW E   +        +L+ 
Sbjct: 67  VSAAIHSSVSGKVAKID--TVVDASGYAKPAIFIDVEG-DEWEETIDRSKTLVKECELSS 123

Query: 161 ETLLELIRQAGISGMGGAGFPTAKKLQSGLS-RTEILIINAAECEPYITADDVLMRQYAH 219
           E +++ I  AGI G+GGA FPT  KL    S + E +IINA ECEPY+TAD  LM ++A 
Sbjct: 124 EEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAECVIINAVECEPYLTADHQLMLEHAE 183

Query: 220 EIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQQAAQDKPMVIRVIP--TKYPSGGEKQ 277
           E++ G+ I+   +K     IGIE+NKP+A+  + + A      I V+P   KYP GGEKQ
Sbjct: 184 EVMVGVSILMKAVKVNKAFIGIENNKPDAIELMTKVASSYAG-IEVVPLKVKYPQGGEKQ 242

Query: 278 LIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIRRVVTLTGDCFRKPRNV 337
           LI  +T  +V  G +P   G +VQNVG+  A+  A+   +PL  RV+T+TG    KP N 
Sbjct: 243 LIDAITKRQVASGALPISTGAVVQNVGTAFAVYEAVQKNKPLFERVITVTGKSVAKPSNF 302

Query: 338 WALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPITKTANCILAPTRNELT 397
            A +GTP++ L++  G    +   ++I GGPMMG  L + +VP  K ++ IL   + E  
Sbjct: 303 LARIGTPMKQLIDACG-GLPEDTGKVIGGGPMMGKALMNIEVPTAKGSSGILIMNQKEAK 361

Query: 398 SSDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCPSE 457
             + +  CIRC +C  ACP+ L P  L   ++  +F+  E+  + DCIECG+C + CP+ 
Sbjct: 362 RGEAQ-TCIRCAKCVSACPMGLEPYLLGALSENGDFETMEKERIMDCIECGSCQFTCPAN 420

Query: 458 IPLVQYYRQAKAEI 471
            PL+ Y R  K ++
Sbjct: 421 RPLLDYCRLGKGKV 434