Pairwise Alignments

Query, 801 a.a., electron transport complex subunit RsxC from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Na(+)-translocating NADH-quinone reductase subunit A (RefSeq) from Shewanella sp. ANA-3

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 99/447 (22%), Positives = 170/447 (38%), Gaps = 79/447 (17%)

Query: 58  RQPIINASIPNELVLPLKQHIGKAGDLLVKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVI 117
           RQ I   + P+++ L  ++++G    +LV+VGD+V KGQPL +   T  +   AP SG I
Sbjct: 24  RQIIEPGNRPSQVALLGEEYVGLKPTMLVEVGDKVKKGQPLFEDKKTKGVLFTAPASGEI 83

Query: 118 SAIEPRTVAHPSGLSELCIVLTPDQQEEWFELQPQPDFQQLTPETLLELIRQAGI-SGMG 176
            AI          +   C  L  D+Q          D Q L+ + +   + ++G+ + + 
Sbjct: 84  VAIHRGERRVLQSVVIRCNGLDADEQ---IRFDIHTDLQALSADVVKAQLVKSGLWTALR 140

Query: 177 GAGFPTAKKLQSGLSRTEILIINAAECEPYITADDVLMRQYAHEIIQGIEIVEHILKPKL 236
              F     L    S+   + + A +  P      +++ +       G+ ++ H+ + K+
Sbjct: 141 TRPFSRVPALD---SKPAGIFVTAMDTNPLAADPRLIIAEQRDAFKAGLAVLSHLTEGKV 197

Query: 237 TIIGIEDNKPEAVAALQQAAQDKPMV-IRVIPTKYPSGGEKQLIKILTNLEVPKGGIPAD 295
            +     +K EA+        D P V +R     +P+G     I            +P  
Sbjct: 198 YLC---QDKGEAL-----VGADLPKVEVRRFTGVHPAGLAGTHIHFT---------LPVS 240

Query: 296 IGLMVQNVGSLQAIA--RAIVHGEPLIRRVVTLTGDCFRKPRNVWALLGTPVQALLNEFG 353
           I   V ++G    IA  +    GE    RVV L G     PR +   LG  + AL+    
Sbjct: 241 IERQVWHIGYQDVIAYGKLFQTGELYTDRVVALGGPSVLNPRLLRTQLGAELSALV---- 296

Query: 354 YKADKKLP---RLIMGGPMMGFT---------------------LPHAQVPITKTANCIL 389
             AD+  P   R++ G  + G T                     + H  +P  +  +   
Sbjct: 297 --ADEVKPGNNRVVSGSVLSGHTARGVHDFLGRFHNQVSVLAEDVQHQVLPWVRGGSDKF 354

Query: 390 APTRN------------ELTS--SDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDK 435
           + TR             E T+    +  A +  GQ     P+ +LP  L       + D+
Sbjct: 355 SITRAVTSRLFGLTKSFEFTTHQGGSHRAMMAFGQLDRVMPLDILPTLLVRDLVVRDTDE 414

Query: 436 CE-----ELDLKDCIECGACAYVCPSE 457
            +     ELD +D      C +VCP +
Sbjct: 415 AQALGALELDEED---LALCTFVCPGK 438