Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  122 bits (305), Expect = 2e-32
 Identities = 92/323 (28%), Positives = 147/323 (45%), Gaps = 49/323 (15%)

Query: 31  GLIAQTYFFG---YGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVVTAWLLAV 87
           GL   T  FG   YG +  L + ++  V      M+  +         +   VTA L ++
Sbjct: 99  GLTESTGIFGLMAYGLIYYLPIYLAALVTTMFWEMVFARARRQEMQEGF--FVTALLFSL 156

Query: 88  AIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIK 147
            +P     W+VV+G+ F +V+AK L+GG+G N  NPA+     +  ++P ++T+      
Sbjct: 157 CLPANISLWLVVMGISFGVVVAKELFGGMGYNFLNPALAGLAFIYFAYPSEVTT------ 210

Query: 148 LTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGITMATPL-DAFKTSLKAG-----HT 201
                                   S Q +   +DG + AT L       +K       H 
Sbjct: 211 ------------------------SAQLV--AVDGYSSATTLAQVAANKMKFAEYPWYHA 244

Query: 202 MSETLTQPQFSGF-AGIGWEWVNIAYLLGGLILLKLRIIRWHIPMAMLAGLVFTALLAQL 260
            ++      F GF  G   E   +A   GGL+L+  R+  W I + +L G + T+LL  +
Sbjct: 245 FNDAAWWDAFLGFEVGAIGETSALAIFAGGLLLILTRLADWRIVVGVLVGAIATSLLFNV 304

Query: 261 FAPGTTASPMI----HLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSW 316
           F  G  A   +    HL++G   LG  F+ATDPV+ + T  G+L++G  +GAM  LIR  
Sbjct: 305 FGDGKNAMAAMPWTWHLVTGGFALGMMFMATDPVTTAYTRPGKLMFGILVGAMTILIRVA 364

Query: 317 G-GFPDGVAFAVLLANMCVPLID 338
               P+G+  A+L AN+  P++D
Sbjct: 365 NVKQPEGIMLAILFANLWAPVLD 387