Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  125 bits (314), Expect = 2e-33
 Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 58/276 (21%)

Query: 80  VTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQM 139
           VT+ L A+ +P   P W+V +G+ F +V+AK ++GG G+N  NPA+     L  ++P+ M
Sbjct: 154 VTSILFALTLPATIPLWMVALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLNM 213

Query: 140 ---TSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGITMATPLDAFKTSL 196
              T+W+                                     DG + AT L     S 
Sbjct: 214 SGDTTWVVA-----------------------------------DGFSGATAL-----SQ 233

Query: 197 KAGHTMSETLTQPQFSGFAG-----IGWEWVNIAYLLGGLILLKLRIIRWHIPMAMLAGL 251
            A  T+     Q  +  F G     +G E   +A LLGGL+++  RI  W I   ++ G+
Sbjct: 234 AAQGTLEYGFNQAWWDAFLGFIPGSVG-EVSTLAILLGGLVIIYTRIASWRIVGGVMVGM 292

Query: 252 VFTALLAQLFAPGTTASPMI------HLLSGATMLGAFFIATDPVSASTTDKGRLIYGFF 305
           +  +LL  L A G+  +PM       H++ G    G  F+ATDPVSAS T++ +  YG  
Sbjct: 293 IAVSLL--LNAIGSDTNPMFAMPWYWHMVLGGFAFGMMFMATDPVSASFTNQAKWAYGIL 350

Query: 306 IGAMVFLIRSWG-GFPDGVAFAVLLANMCVPLIDYY 340
           IGAM   IR     FP+G+  A+L AN+  PL D++
Sbjct: 351 IGAMAVFIRVINPAFPEGMMLAILFANLFAPLFDHF 386