Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  130 bits (328), Expect = 5e-35
 Identities = 104/348 (29%), Positives = 161/348 (46%), Gaps = 56/348 (16%)

Query: 11  LRSKRSTADVMRWVLACALPGLIAQTY----FFGYGTLIQL---LLAISVAVALEAGIML 63
           L S  +T DV + +   A+ G + +       FGYG    L   L A+ V++  E     
Sbjct: 78  LASGLTTPDVWQLLPFNAITGGLGEQSGFFGLFGYGLSFYLPIYLTALLVSLFWEMVFAK 137

Query: 64  LRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNP 123
           +R++            VTA L  + +P  +P W+V +G+ F +++AK ++GG+G N  NP
Sbjct: 138 VRRQELHEGF-----FVTALLFTLILPVSTPLWIVALGITFGVIMAKEVFGGMGYNFLNP 192

Query: 124 AMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGI 183
           A+  Y  +  ++P ++      +         VD FS                     G 
Sbjct: 193 ALAGYAFIYFAYPTEVAQIAQFV--------AVDGFS---------------------GA 223

Query: 184 TMATPLDAFKTSLKAGHTMSETLTQP----QFSGF-AGIGWEWVNIAYLLGGLILLKLRI 238
           T      A K S + G+T  +  + P     F GF  G   E   +A L+GGL+LL  R+
Sbjct: 224 TTLIQTAAGKMSFE-GYTWYQAFSDPLWWDAFFGFTVGSIAETSTLAILIGGLLLLLTRL 282

Query: 239 IRWHIPMAMLAGLVFTALLAQLFAPGTTASPMI------HLLSGATMLGAFFIATDPVSA 292
             W +   ++AG+V TA+L  L   G+  + M       HL++G   LG  F+ATDPV+ 
Sbjct: 283 ADWRVVAGVMAGMVATAVLFNLI--GSAKNEMFAMPWTWHLVTGGFALGMMFMATDPVTT 340

Query: 293 STTDKGRLIYGFFIGAMVFLIRSWG-GFPDGVAFAVLLANMCVPLIDY 339
           + T +G+  YG  IG M  LIR      P+G+  A+L AN+  PL DY
Sbjct: 341 AYTRQGKFAYGVLIGFMTVLIRVLNLKMPEGIMLAILFANLWAPLFDY 388