Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  412 bits (1060), Expect = e-120
 Identities = 203/348 (58%), Positives = 259/348 (74%), Gaps = 2/348 (0%)

Query: 1   MAFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAG 60
           MAF IASSPH+     T+ VM+ V+ C LPGL+ Q  FFG+GTLIQ+LLAI VA++ EA 
Sbjct: 1   MAFKIASSPHVTRNLQTSTVMQRVILCLLPGLVVQCAFFGWGTLIQVLLAIIVALSCEAA 60

Query: 61  IMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNP 120
           +M LRKRS  ++L D SA++TA L+ VAIPPL+PWW++V+G  FAIVI KHLYGGLG N 
Sbjct: 61  VMKLRKRSIKASLGDNSAMLTAILIGVAIPPLAPWWMIVMGTAFAIVIVKHLYGGLGHNL 120

Query: 121 FNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGI 180
           FNPAM AYV+LL+SFP+QMT+W+AP  +     S+VDS  LIF      G+  +Q R GI
Sbjct: 121 FNPAMAAYVLLLVSFPLQMTTWIAPSTVALNTPSIVDSLQLIFNVGAHVGM--EQFRLGI 178

Query: 181 DGITMATPLDAFKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIR 240
           DGI+MATPLD  KT L  G T +E++ +  F G  G+GW WVN+AYL GG++LLKL+ IR
Sbjct: 179 DGISMATPLDTLKTDLSLGLTTTESMAKSIFDGSTGVGWFWVNLAYLAGGIVLLKLKAIR 238

Query: 241 WHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRL 300
           WHI   +LAGL   + +  L +P T ASP+ HL SGATML AFFIATDPV+A+T+ +GR+
Sbjct: 239 WHISTGVLAGLFVASSVGFLLSPDTHASPLFHLFSGATMLAAFFIATDPVTAATSPRGRI 298

Query: 301 IYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH 348
           I+G  IG +V++IR+ GG+PD  AFAVLLAN+C P IDYY +PRTYGH
Sbjct: 299 IFGALIGVLVYIIRTQGGYPDAFAFAVLLANLCAPFIDYYVRPRTYGH 346