Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  127 bits (320), Expect = 4e-34
 Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 58/276 (21%)

Query: 80  VTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQM 139
           VT+ L A+ +PP  P W+V +G+ F +V+AK ++GG G+N  NPA+     L  ++P+ M
Sbjct: 154 VTSILFALTLPPTIPLWMVAMGITFGVVVAKEVFGGTGRNFLNPALAGRAFLFFAYPLNM 213

Query: 140 ---TSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGITMATPLDAFKTSL 196
              TSW+                                     DG + AT L     S 
Sbjct: 214 SGDTSWVVA-----------------------------------DGYSGATAL-----SQ 233

Query: 197 KAGHTMSETLTQPQFSGFAG-----IGWEWVNIAYLLGGLILLKLRIIRWHIPMAMLAGL 251
            A  ++     Q  +  F G     +G E   +A LLGGL+++  RI  W I   ++ G+
Sbjct: 234 AAAGSLDYAFNQNWWDAFFGFIPGSVG-EVSTLAILLGGLVIIYTRIASWRIVGGVMVGM 292

Query: 252 VFTALLAQLFAPGTTASPMI------HLLSGATMLGAFFIATDPVSASTTDKGRLIYGFF 305
           +  A+   L   G+  +PM       HL+ G    G  F+ATDPVSAS T++ +  YGF 
Sbjct: 293 I--AISTLLNVVGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNQAKWAYGFL 350

Query: 306 IGAMVFLIRSWG-GFPDGVAFAVLLANMCVPLIDYY 340
           IGAM   IR     FP+G+  A+L AN+  PL D++
Sbjct: 351 IGAMAVFIRVINPAFPEGMMLAILFANLFAPLFDHF 386