Pairwise Alignments

Query, 348 a.a., electron transport complex subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  125 bits (315), Expect = 1e-33
 Identities = 109/342 (31%), Positives = 152/342 (44%), Gaps = 44/342 (12%)

Query: 11  LRSKRSTADVMRWVLACALPG-LIAQTYFFG---YGTLIQL---LLAISVAVALEAGIML 63
           L S  ST D  +  L  AL G L A+T   G   YG    L   L A+   +  E     
Sbjct: 84  LASGLSTPDTWKLALFNALSGGLTAETSVIGLFLYGLSFYLPIYLTALLTGLFWEVVFAK 143

Query: 64  LRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNP 123
           +R +            VTA L  + +P   P W+VV+G+ F +VIAK L+GG+G N  NP
Sbjct: 144 VRHQELHEGF-----FVTALLFTLILPVSIPLWLVVMGISFGVVIAKELFGGMGYNFLNP 198

Query: 124 AMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGI 183
           A+     +  ++P ++T        T +    VD FS           +L Q   G    
Sbjct: 199 ALAGLAFIYFAYPSEVT--------TVKQLVAVDGFS--------GATALAQAAAGQLQF 242

Query: 184 TMATPLDAFKTSLKAGHTMSETLTQPQFSGFA-GIGWEWVNIAYLLGGLILLKLRIIRWH 242
                  AF          S+      F GF  G   E   +A LLGGL+LL  R+  W 
Sbjct: 243 ADYAWYSAF----------SDPNWWNNFFGFTVGAIGETSTLAVLLGGLLLLITRLADWR 292

Query: 243 IPMAMLAGLVFTALLAQLFAPGTTASPMI----HLLSGATMLGAFFIATDPVSASTTDKG 298
           I + ++ G++ TA L  L    T     +    HL++G   +   F+ATDPV+ S T  G
Sbjct: 293 IVVGVMLGMIATATLFNLIGSSTNQMMSMPWTWHLVTGGFAIAMMFMATDPVTTSYTRPG 352

Query: 299 RLIYGFFIGAMVFLIR-SWGGFPDGVAFAVLLANMCVPLIDY 339
           + +YG  IG M  LIR +    P+GV  A+L AN+  PL DY
Sbjct: 353 KFVYGALIGFMTVLIRVANPKMPEGVMLAILFANLWAPLFDY 394