Pairwise Alignments

Query, 230 a.a., electron transport complex subunit E from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 5e-17
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 7   LMLNGMWNNNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVTVSLVRDYVPKE 66
           L +   + +N AL   LG+C  LAVS  V+ A GLG+A ++V+  +     L+   V   
Sbjct: 7   LFIQATFLDNMALSFFLGMCTFLAVSKKVSTAFGLGVAVIVVMTLAVPLNQLIYAKVLAP 66

Query: 67  ---------------VRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCII 111
                          +++  F+ +IA+LV  +++ ++ Y   LY SLGIF+PL+  NC I
Sbjct: 67  GALAWAGMPGIDLSYLQLITFIGVIAALVQILEMFLDKYIPSLYDSLGIFLPLLTVNCAI 126

Query: 112 IGRAEAFASKN-DVLPAALDGFWMGLGMTSVLVVLGSLRE 150
                  A+++ +   +A+     G G    +V+L  LRE
Sbjct: 127 FAGVIFMANRDYNFAESAVFAMGSGTGWALAIVMLAGLRE 166