Pairwise Alignments

Query, 230 a.a., electron transport complex subunit E from Vibrio cholerae E7946 ATCC 55056

Subject, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  126 bits (317), Expect = 3e-34
 Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 14/208 (6%)

Query: 5   RTLMLNGMWNNNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVTVSLVRDYVP 64
           R ++   ++ NNP  +Q+LG+C  LAVS+++  A+ + +A   VLV SN+ +S +R+++P
Sbjct: 8   RDMLAGPVFANNPVAMQVLGVCSALAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIP 67

Query: 65  KEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFASKNDV 124
             VRI   + +IASLV  V +++   AY L   L +F+ LI+TNCII+GRAEAFA K   
Sbjct: 68  NSVRIIAQMTVIASLVIIVDMVLQDVAYELSKQLSVFVGLIITNCIIMGRAEAFAMKYPP 127

Query: 125 LPAALDGFWMGLGMTSVLVVLGSLREIIGNGTLFDGADLLL---GEWAKVLRIEVFHFDS 181
             A +D      G   VL+ +  +RE++G G LF  + L     G W   L  E+F    
Sbjct: 128 HLAVVDAVGNAAGYGLVLISVAFVRELLGTGNLFGHSVLTTVENGGW--YLPNEMFK--- 182

Query: 182 AFLLALLPPGAFIGVGFLIAAKSVIDKQ 209
                 LPP AF  +G LI + +VI ++
Sbjct: 183 ------LPPSAFFLIGLLIWSINVIQRK 204