Pairwise Alignments

Query, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., Sodium-type flagellar protein motY precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  116 bits (291), Expect = 6e-31
 Identities = 73/249 (29%), Positives = 134/249 (53%), Gaps = 8/249 (3%)

Query: 45  ECRLVHPIPNYGDAEFSSRAGKKINLDFELKMRRPMGDTRNVSLVSMPPVWRPGEGADRI 104
           ECRL  PI ++G  EF  RAG++    F LK   PM    + +L++    W+PG G   +
Sbjct: 39  ECRLSQPITDFGSGEFVRRAGEQAT--FRLKAYNPMLGGGSATLLAAAAPWQPGRGDINL 96

Query: 105 TNLQFFKQFDGYIGGQT-AWSLLSELEKGRYPTFSYQDWQSRDQRI-EVALSSVLFQQPY 162
            ++        +   Q  A  L+S L  GR P        + D R+ EV L  V F + +
Sbjct: 97  GSVSIGSGDVLFNSSQVQAGRLISGLMDGRSPVVRRN---TEDGRVSEVRLLPVRFNKAF 153

Query: 163 NEFSDCISKLLPYSFEDISFTILHYDQGTSVELNKASQKRLAQIAEYVRYNQDIDLVLVS 222
           +++  C++KLLP +FE +  T + +  G  VEL+  ++ +L  + ++++ +  ++ V + 
Sbjct: 154 SDYQSCVAKLLPKNFEQVKQTQIGFP-GEEVELDARAKAQLQVMLDFIKADPSVNHVELD 212

Query: 223 TYTDSTDTNNNSQNLSEQRAEVLREYFKSIGLPEDRIQVQGYGKRRPIADNASPIGKDKN 282
            ++D++     ++ LS +RA  ++++FK+ G  E +I ++ +G+R P+  N +   + KN
Sbjct: 213 GHSDNSGNRLTNRELSRRRALAVQDFFKANGFQESQITLRFHGERYPLVPNTNAANRAKN 272

Query: 283 RRVVISLGR 291
           RRVV+ L R
Sbjct: 273 RRVVVRLER 281