Pairwise Alignments

Query, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

Subject, 122 a.a., hypothetical sodium-type flagellar protein MotY (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 1e-29
 Identities = 51/116 (43%), Positives = 75/116 (64%)

Query: 27  YMATPQQSTWQMATNTPLECRLVHPIPNYGDAEFSSRAGKKINLDFELKMRRPMGDTRNV 86
           Y+A+  +S W+++ N+P+ CRL H IP+YG A F+S AGK++NL+F L M          
Sbjct: 7   YVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSEAGKQLNLNFTLDMWVKPDQVTQA 66

Query: 87  SLVSMPPVWRPGEGADRITNLQFFKQFDGYIGGQTAWSLLSELEKGRYPTFSYQDW 142
            L+S  P WRPG  +  IT+L++ K F+G +  + AWS+L+EL +G  PTF Y DW
Sbjct: 67  KLMSRAPKWRPGVVSKEITSLRYQKYFNGEVPKRAAWSMLNELSRGMEPTFYYADW 122