Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., pseudouridine synthase from Pseudomonas fluorescens FW300-N2E3

 Score =  298 bits (764), Expect = 6e-86
 Identities = 147/259 (56%), Positives = 183/259 (70%), Gaps = 1/259 (0%)

Query: 2   RIALGIEYDGTHYYGWQRQRE-VKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60
           RIALG+EY G+ Y GWQRQ   V +VQ ALE ALSK+A+ PV + CAGRTDAGVH  GQV
Sbjct: 8   RIALGVEYKGSRYRGWQRQASGVATVQLALETALSKVADSPVSLHCAGRTDAGVHACGQV 67

Query: 61  VHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           VHFDT  +R + AW MGAN NLP DI+V WA  +P  FHARF A ARRYRYVIYN   RP
Sbjct: 68  VHFDTQVDRSLKAWVMGANINLPHDISVSWAKVMPAHFHARFKAIARRYRYVIYNDQIRP 127

Query: 121 GILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
             LN  V+  H  LDV++M +A Q+L+G +DF++FRA  CQ++SP + + HL VTRHG+ 
Sbjct: 128 AHLNEEVTWNHRPLDVQRMAEAAQHLIGTHDFSAFRAGQCQAKSPIKEIHHLRVTRHGKM 187

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVS 240
           +V+DI+A+AF+HHMVRNI G L+ +G GE+  EW + +L  + R     TA   GLYLV 
Sbjct: 188 IVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWAKEVLESRVRRTGGVTAHPFGLYLVQ 247

Query: 241 VDYPAHFGLPEMPIGPLFL 259
           V+Y   F LPE  IGP FL
Sbjct: 248 VEYRDEFELPERYIGPHFL 266