Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., tRNA pseudouridine synthase A from Synechococcus elongatus PCC 7942

 Score =  163 bits (413), Expect = 3e-45
 Identities = 97/246 (39%), Positives = 135/246 (54%), Gaps = 5/246 (2%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           RIAL I+Y G  + GWQRQ   +SVQ  LE A++ +  HPV VQ AGRTD GVH   QV 
Sbjct: 15  RIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQVA 74

Query: 62  HFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRPG 121
           HF+TT+      W    N  L  D+ +R A  VP  +HARFSA+ RRYRY IY       
Sbjct: 75  HFETTSPIPAHRWPSVLNGRLTPDLNIRAAAIVPANWHARFSASYRRYRYTIYTDPCPNL 134

Query: 122 ILNSGVSHYH-GELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGRY 180
            LNS V HY+   L   +MQ A Q L+G +   +F+    + +  W +V    V R    
Sbjct: 135 FLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRRDSL 194

Query: 181 VVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQ--WLLAQKDRTLAAATAKAEGLYL 238
           + I+++A+ F++ M+R + G L+ VG G +  E     W+  ++DR   A  A  +GL L
Sbjct: 195 IEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHA--APPQGLCL 252

Query: 239 VSVDYP 244
           + + YP
Sbjct: 253 LRIGYP 258