Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., tRNA pseudouridine(38-40) synthase TruA from Pedobacter sp. GW460-11-11-14-LB5

 Score =  134 bits (336), Expect = 2e-36
 Identities = 86/245 (35%), Positives = 125/245 (51%), Gaps = 4/245 (1%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           R  + + YDG+ Y+GWQ Q    +VQE L+KA+S      +E    GRTDAGVH T    
Sbjct: 5   RYFIQLAYDGSLYHGWQTQPNAITVQELLDKAMSVFFRQAIETLGCGRTDAGVHATDFYA 64

Query: 62  HFDT--TAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYR 119
           HFD     E +++    G NA LP  IA +  + V D+ HARF ATAR Y+Y  Y H  +
Sbjct: 65  HFDVEGVEEAKVLNAVTGINAMLPYQIAAKKIIPVHDDAHARFDATARAYKY--YLHFEK 122

Query: 120 PGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHGR 179
                +       +LD E M  A   LL   DF+ F   + Q+ +    V          
Sbjct: 123 NPFKLNRSWLVKDQLDREAMNSAAALLLNYTDFSCFSKSNTQTFTNNCKVTKAVFEEQED 182

Query: 180 YVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLV 239
            +V  I+A+ F+ +MVR I G+L+ +G+ E      + ++  K+R+ A  +  A GLYLV
Sbjct: 183 GLVFTIQADRFLRNMVRAIMGTLVQIGKKEINLTDFKAIIESKNRSNAGQSVPACGLYLV 242

Query: 240 SVDYP 244
            ++YP
Sbjct: 243 KIEYP 247