Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., tRNA pseudouridine synthase A (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  134 bits (336), Expect = 3e-36
 Identities = 99/288 (34%), Positives = 133/288 (46%), Gaps = 46/288 (15%)

Query: 2   RIALGIEYDGTHYYGWQRQREV-----KSVQEALEKALSKIANHPVEVQCAGRTDAGVHG 56
           R+ L I Y GT  +GWQ Q        ++VQ  LE  +S++A   V +  AGRTDAGVH 
Sbjct: 3   RLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGVHA 62

Query: 57  TGQVVHFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIY-N 115
            GQV H D    +  V W    NA LP DI +       D+FHARF A  +RY Y ++  
Sbjct: 63  DGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFHARFDALGKRYTYRLWLT 122

Query: 116 HVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSF-----------RAVHCQSRS 164
             + P  L+ G     G LDV  M +A ++L G +DF +F           R VH   R 
Sbjct: 123 RRFIPPKLH-GQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAIRRC 181

Query: 165 P------------------WR-NVMHLN---------VTRHGRYVVIDIKANAFVHHMVR 196
           P                  WR    H +         +   G  +V   + + F+  MVR
Sbjct: 182 PSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQMVR 241

Query: 197 NITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYLVSVDYP 244
           N+ G L+AVGRG    + +  ++A  DR+ A ATA A GL L  V YP
Sbjct: 242 NMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289