Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., tRNA pseudouridine synthase A (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  158 bits (399), Expect = 1e-43
 Identities = 96/249 (38%), Positives = 135/249 (54%), Gaps = 7/249 (2%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           R AL IEYDG  + GWQRQRE  SVQ A+E AL  +      +  AGRTDAGVH  GQV 
Sbjct: 3   RFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQVA 62

Query: 62  HFDTTAERQMVAWTMGANANL-PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120
           H D   +      +   NA+L P  +AV  A  V ++FHARFSA  R Y + +      P
Sbjct: 63  HVDLARDWDPFRLSEALNAHLRPAPVAVLAAARVGEDFHARFSALERSYLFRLLVR-RAP 121

Query: 121 GILNSG-VSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH-- 177
              ++G V      LDVE M++  +YL+G++DFT+FR+  CQ+ SP + +  + +     
Sbjct: 122 ATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASPVKTLDEITIEESPR 181

Query: 178 --GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEG 235
             G      ++A +F+H+ VR+I G+L  VG G   P  ++  L  +DR         +G
Sbjct: 182 DAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAPQG 241

Query: 236 LYLVSVDYP 244
           LYL +V YP
Sbjct: 242 LYLRAVRYP 250