Pairwise Alignments

Query, 264 a.a., tRNA pseudouridine(38-40) synthase TruA from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., tRNA pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  154 bits (388), Expect = 2e-42
 Identities = 97/252 (38%), Positives = 133/252 (52%), Gaps = 17/252 (6%)

Query: 2   RIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQVV 61
           R  + + YDGT+Y+GWQ Q    SVQE L KALS      VEV  AGRTDAGVH +  V 
Sbjct: 3   RYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLMVA 62

Query: 62  HFDTTAERQMVAWTMGANANLPKDIAVRWAMAVPDEFHARFSATARRYRYVI------YN 115
           HFD       V      N  LP DI+V     V  + HARF ATAR Y+Y +      +N
Sbjct: 63  HFDHEDVLDTVTVADKLNRLLPPDISVYRVRQVKPDAHARFDATARTYKYYVTTAKYPFN 122

Query: 116 HVYRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVT 175
             YR  +        +G LD E+M +A + L    DFTSF  +H   ++   ++ H   T
Sbjct: 123 RQYRYRV--------YGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWT 174

Query: 176 R---HGRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAK 232
           +        V  I+A+ F+ +MVR I G+L+ VGRG+   E  + ++ Q+DR  A  +A 
Sbjct: 175 KMEGEDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAP 234

Query: 233 AEGLYLVSVDYP 244
              L+LV+V+YP
Sbjct: 235 GNALFLVNVEYP 246