Pairwise Alignments
Query, 1621 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 864 a.a., Probable type IV pilus assembly FimV-related transmembrane protein from Pseudomonas fluorescens FW300-N2E2
Score = 70.9 bits (172), Expect = 6e-16
Identities = 192/821 (23%), Positives = 302/821 (36%), Gaps = 198/821 (24%)
Query: 9 LRTSKFKAHTEPFMRRFFQ------RLLLPVAVMV-VTQTSFVSAESIRLVGPDGQVQPT 61
LR + + +EP ++ Q RLL +V++ ++ S +A++ R P QV T
Sbjct: 95 LRVTSSRPLSEPMVKFLVQVMWPNGRLLRDYSVLLDPSKFSPQAADAARAKPP--QVVAT 152
Query: 62 PQYSENIVRNSANNEPGRFFGPTSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQAFE 121
P + +P ++ T+ TLW IA+++R SV QQT+LAI LNP AF
Sbjct: 153 PV--------TGATKPSQY--TTTPRDTLWEIAAKVRNGGSV--QQTMLAIQALNPNAFI 200
Query: 122 NQNIHTLIPGSTLRVPSLAQISRNSTQDAVNIMASHQAKLNQTPDTPVRPVAPPRPAPVA 181
N NI+ L G LR+P Q + A+ +A+ A + R VA +
Sbjct: 201 NGNINLLKTGQVLRLPDPVQSTALPQPQAIAEVAAQNAAWR----SGRRGVAGAGKQQLD 256
Query: 182 TPK------VEAVAQTPPQVTPTTAPQEKAPTELKTPAKPSQSTDAEVMALEEK------ 229
K A A ++ +A KA + K A +Q+ ++ +E
Sbjct: 257 ATKRGRGEGAPAQAAGRDNLSLVSADSAKAGGKGKGAAGDAQALSNKLAVTQESLDSARR 316
Query: 230 -NHTLRLMLSQVQSEVSTLKEELGDENR---------------------IRSEVERLLEE 267
N L+ ++ +QS++ L+ + +N + +E+
Sbjct: 317 DNEELKSRMADLQSQLDKLQRLIELKNNQLAKMQAEGAAVPPAGEAPPAMSAELTPAPAA 376
Query: 268 ERRKAEEASRLAPSA------------------LDNLLSNGWLVALLALIPGLLIAIVVL 309
+ A A AP A ++LL+N L+ L+ G ++ +++L
Sbjct: 377 QAPTAAPAPEAAPEATPPAAPVEPTPAASNEQKYNDLLTNPILLGLIG--GGAVLLLLLL 434
Query: 310 LLLNRRSSAQQE----------------------------------------NPTQNNIT 329
LLL RR AQQE P
Sbjct: 435 LLLARRRKAQQEAEKHLRMARALEEEADFSPELDLPPSSFEGIDVPPPSVKLEPKPAPAP 494
Query: 330 SEMPTAAPVTLGPEQTEDIGDDLLL-----DDDLFSTTDDKEENDAEKAFSD--EDDVFA 382
+ +P APV T I L+ DD+ + +D E + A
Sbjct: 495 APVPKPAPVVAPVVVTPPIAAPLVAPAAERSDDVLPQAQSHIDRGRLNQAADLLEQGIKA 554
Query: 383 DLNETDLDFNL---DGQDSD-DLFVGIDDD-----------GDLDTEFDAL-NESANGIS 426
+ +DL L GQ D D FV + L + F A+ +A G++
Sbjct: 555 EPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKSRFPAMVVATAAGLA 614
Query: 427 VNADDKALGLEEMERALNDVSEPTDNDDLNSFDLADENQMSEDDIEALLSGDEENELLSD 486
L + ++ L D PTD + N+FDL S DD+E +
Sbjct: 615 AATVAAELDAQYVKDLLED-KTPTDEELDNAFDL------SLDDLETTPVAPTPEPV--- 664
Query: 487 GKVDQSLLDDLLASELDAL--DDEPAIQDTETLDTLLNDELASLSEEDDDEFDLSGAGVA 544
+ELDA DD+ + + T N+ L LSE D DL
Sbjct: 665 -------------AELDAFPEDDDLSFESVLKQQTEANESLDDLSEFD---LDLGAEAPT 708
Query: 545 GDQDLDDLFASIEEQADLEQLEAKAIDETALLDEILAEQDAPLSEESTELLDELLDDFDK 604
LDD ++ DL+ L+ A + AL D + D EL DFD
Sbjct: 709 PVAALDDEDFLLDLDDDLKGLDLPATETPALAD--IPADDL-----------ELPADFDL 755
Query: 605 PENDEFDAQTA--DLLQPEEPILDLEEDSTQLLNEVLGEP--VPEELASGLEIDQNSTEL 660
+DE DA A D + E ++ E D L++ LG+P E+ G E D+ +
Sbjct: 756 SLSDEMDAHDAPKDAFESELDDVNAELDR---LSDSLGQPTFTAEDALVGAE-DEPDFDF 811
Query: 661 L---DELLDDLDLDDESIEATE----FSVAPEKLSVEDGTE 694
L DE+ LDL I+ + + E LS D T+
Sbjct: 812 LSGTDEVATKLDLAQAYIDMGDNDGARDILGEVLSEGDATQ 852
Score = 65.1 bits (157), Expect = 3e-14
Identities = 105/443 (23%), Positives = 170/443 (38%), Gaps = 82/443 (18%)
Query: 170 RPVAPPRPAPVATPKVEAVAQTPPQVTPTTAPQEKAPTELKTPAKP-------SQSTDA- 221
+P P P P P V V TPP P AP + ++ A+ +Q+ D
Sbjct: 489 KPAPAPAPVPKPAPVVAPVVVTPPIAAPLVAPAAERSDDVLPQAQSHIDRGRLNQAADLL 548
Query: 222 -EVMALEEKNHTLRLMLSQVQSEVSTLKEELGDENRIRSEVERLLEEERRKAEEASRLAP 280
+ + E + LRL L +V + + E ++ + E + E+ K+ + +
Sbjct: 549 EQGIKAEPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKSRFPAMVVA 608
Query: 281 SALDNLLSNGWLVALLALIPGLLIAIVVLLLLNRRSSAQQENPTQNNITSEMPTAAPVTL 340
+A A + L A V LL ++ +E +++ + PV
Sbjct: 609 TAAG---------LAAATVAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDDLETTPVAP 659
Query: 341 GPEQTEDIGDDLLLDDDLFSTTDDKEENDAEKAFSDEDDVFADLNETDLDFNLDGQDSDD 400
PE ++ D DDDL + K++ +A ++ D L+E DLD G ++
Sbjct: 660 TPEPVAEL-DAFPEDDDLSFESVLKQQTEANESLDD-------LSEFDLDL---GAEAPT 708
Query: 401 LFVGIDDDG---DLDTEFDALNESANGISVNADDKALGLEEMERALNDVSEPTDNDDLNS 457
+DD+ DLD + L+ A AD A +D+ P D
Sbjct: 709 PVAALDDEDFLLDLDDDLKGLDLPATETPALADIPA----------DDLELPAD------ 752
Query: 458 FDLADENQMSEDDIEALLSGDEENELLSDGKVDQSLLDDLLASELDALDDEPAIQDTETL 517
FDL+ ++M D + +S LDD+ A ELD L D Q T T
Sbjct: 753 FDLSLSDEMDAHD--------------APKDAFESELDDVNA-ELDRLSDSLG-QPTFTA 796
Query: 518 DTLLNDELASLSEEDDDEFD-LSGAG-VAGDQDLDDLFASIEEQADLEQLEAKAIDETAL 575
+ L + ED+ +FD LSG VA DL + + + +
Sbjct: 797 EDAL------VGAEDEPDFDFLSGTDEVATKLDLAQAYIDMGDNDGARD----------I 840
Query: 576 LDEILAEQDAPLSEESTELLDEL 598
L E+L+E DA E+ E+L L
Sbjct: 841 LGEVLSEGDATQKSEAQEMLSRL 863
Score = 58.5 bits (140), Expect = 3e-12
Identities = 116/480 (24%), Positives = 188/480 (39%), Gaps = 92/480 (19%)
Query: 1171 AESEVESELELASDLEEEEPFTELNELDLPEYTEEDALADAQLEPAVESEVEPELELATE 1230
A+ E E L +A LEEE F+ ELDLP + E P ++EP+ A
Sbjct: 443 AQQEAEKHLRMARALEEEADFSP--ELDLPPSSFEGIDV-----PPPSVKLEPKPAPAPA 495
Query: 1231 PAEEEAFPELDELDLPEYTEEDALADA-----QLEPAAEAEVEP-ELELASDLEEKETFT 1284
P + A P + + + +A A + P A++ ++ L A+DL E+
Sbjct: 496 PVPKPA-PVVAPVVVTPPIAAPLVAPAAERSDDVLPQAQSHIDRGRLNQAADLLEQGIKA 554
Query: 1285 ELDELDLP--------EYTEEDALADAQLEPAAESEVEPELE------------LASVLE 1324
E DL + + DA + + A E ++E A+ L
Sbjct: 555 EPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKSRFPAMVVATAAGLA 614
Query: 1325 EEDSFTELDELDLPEYTEKDALADAQLEPAAESEVEP-ELGDETETLAQETESDALVADE 1383
ELD + + E D +L+ A + ++ E T E DA D+
Sbjct: 615 AATVAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDDLETTPVAPTPEPVAELDAFPEDD 674
Query: 1384 DLLASVESAVDEVQPELLGATQDVPPTQSLANKAFDEEALHDWLSDNPDGEKPFSFDRPL 1443
DL S ES + + Q+ AN++ D+ LS+ F D
Sbjct: 675 DL--SFESVLKQ---------------QTEANESLDD------LSE-------FDLDLGA 704
Query: 1444 DAKTIDSAGMDIDAMLQMGGEDWNGFHLTPDQQAQLPDDVPEDEQAIWASETPEPQAKPE 1503
+A T +A D D +L + +D G L + L D +P D+ + A
Sbjct: 705 EAPTPVAALDDEDFLLDLD-DDLKGLDLPATETPALAD-IPADDLELPADF--------- 753
Query: 1504 NWGSQEDLLDFDPQRDGYMTIDELMAQVESEEQGLNPDEEELKLDVGLDEFPD---VIG- 1559
+ +++ D +D + ESE +N + + L +G F ++G
Sbjct: 754 DLSLSDEMDAHDAPKDAF----------ESELDDVNAELDRLSDSLGQPTFTAEDALVGA 803
Query: 1560 -DIRDIDVDSGA-EAAGKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDEIRQQAKRLIDVL 1617
D D D SG E A KLDLA+ YI+M D GA +L E + +GD + +A+ ++ L
Sbjct: 804 EDEPDFDFLSGTDEVATKLDLAQAYIDMGDNDGARDILGEVLSEGDATQKSEAQEMLSRL 863
Score = 39.7 bits (91), Expect = 1e-06
Identities = 74/301 (24%), Positives = 127/301 (42%), Gaps = 42/301 (13%)
Query: 580 LAEQDAPLSEESTELLDELLDDFDKP-ENDEFDAQTADLLQPEEPILDLEEDSTQLLNEV 638
L EQ + ++L +L++ + + + D F AQ L+ E +E+ ++ V
Sbjct: 547 LLEQGIKAEPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKSRFPAMV 606
Query: 639 LGEPVPEELAS-GLEID-QNSTELL------DELLD---DLDLDDESIEATEFSVAPEKL 687
+ A+ E+D Q +LL DE LD DL LDD +E T + PE +
Sbjct: 607 VATAAGLAAATVAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDD--LETTPVAPTPEPV 664
Query: 688 SVEDGTELFDEL---LEIEQHPESAESLPELATEDEFNSDTFIDDLLNSAPAKDPLLEPV 744
+ D D+L ++Q E+ ESL +L+ EF+ D A+ P
Sbjct: 665 AELDAFPEDDDLSFESVLKQQTEANESLDDLS---EFDLD---------LGAEAPTPVAA 712
Query: 745 LDENEAFAQADDFDFNPEIEGGLEDDLSQPSAL---PANEFGTPQDEDW-VFDEDDSSPT 800
LD+ + DD D GL+ ++ AL PA++ P D D + DE D+
Sbjct: 713 LDDEDFLLDLDD-DLK-----GLDLPATETPALADIPADDLELPADFDLSLSDEMDAHDA 766
Query: 801 LEGNAELELSSAEDDLPEQTTATNE---TADELLADLAAQPQSNTVDTSDDALAPDGLSQ 857
+ E EL +L + + + TA++ L +P + + +D+ L+Q
Sbjct: 767 PKDAFESELDDVNAELDRLSDSLGQPTFTAEDALVGAEDEPDFDFLSGTDEVATKLDLAQ 826
Query: 858 S 858
+
Sbjct: 827 A 827