Pairwise Alignments
Query, 1621 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 877 a.a., Probable type IV pilus assembly FimV-related transmembrane protein from Pseudomonas fluorescens FW300-N1B4
Score = 87.8 bits (216), Expect = 5e-21
Identities = 198/832 (23%), Positives = 311/832 (37%), Gaps = 173/832 (20%)
Query: 9 LRTSKFKAHTEPFMRRFFQRLLLPVAVMVVTQTSFVSAESIRLVGPDGQVQPTPQYSENI 68
LR + K +EP M +F +++ P ++ + + D QP P +
Sbjct: 95 LRVTSSKPLSEP-MVKFLVQVMWPNGRLLRDYSVLLDPSKFSPQTADAAAQPAPAQTVTA 153
Query: 69 VRNSANNEPGRFFGPTSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQAFENQNIHTL 128
A T+ TLW IA++ R S+ QQT+LAI LNP AF + NI+ L
Sbjct: 154 PVTGATKSSQY---TTTPRDTLWEIAAKARNGGSI--QQTMLAIQALNPDAFIDGNINRL 208
Query: 129 IPGSTLRVPSLAQISRNSTQDAVNIMASHQAKLNQ------TPDTPVRPVAPPRPAPVAT 182
G LR+P Q + S A+ +A+ Q P T + + + A
Sbjct: 209 KTGQVLRLPDQVQSTNLSQPKAIAEVAAQNTAWRQGRRYVAKPGTGQQQLDATKRARGEG 268
Query: 183 PKVEAVAQTPPQVTPTTAPQEK-APTELKTPAKPSQSTDAEVMALEEKNHTLRLMLSQVQ 241
+ A V+ T K A + K + T+ + A N L+ +S +Q
Sbjct: 269 ASSQPAADKLSLVSADTGKGGKGAAGDAKALSDKLAVTEESLDATRRDNAELKSRMSDLQ 328
Query: 242 SEVSTLKE--ELGDENRIRSEVE-----------------------------RLLEEERR 270
S++ L+ EL + + + E +
Sbjct: 329 SQLDKLQRLIELKNNQLAKLQAEGGADASASSAPAMSAELAANTAATPADASATTSAPQA 388
Query: 271 KAEEASRLAPSALDN-----LLSNGWLVALLALIPGLLIAIVVLLLLNRRSSAQQE---- 321
A EA AP+ +N LL+N L+ L+ G ++ +++LLLL RR AQQE
Sbjct: 389 AAPEAVEPAPATSENQKFNELLTNPILLGLVG--GGAVVLLLLLLLLARRRKAQQEAEKH 446
Query: 322 ------------------------------NPTQNNITSEMPT----------------A 335
P+ T+ P A
Sbjct: 447 LRMARALEEEQEFSVDQDLPPSSFEGLEVPPPSVKLATAPTPAPAPAPVIAPVVVTPPIA 506
Query: 336 APVTLGPEQTEDIGDDLLLDDDLFSTTDDKEE-----NDAEKAFSDEDDVFADLNETDLD 390
AP+ + D DD+L T + DA K D+ L E
Sbjct: 507 APLVSPAAERSDRSDDVLAQAQSHITGGRLNQAAALLEDAIKQAPQRSDLRLKLME---- 562
Query: 391 FNLDGQDSD-DLFVG----IDDDGD-------LDTEFDALN-ESANGISVNADDKALGLE 437
+ GQ D D FV + +GD L + F A+ +A+G++ A L +
Sbjct: 563 --VYGQQGDRDAFVAQERQLVANGDNFARVEELKSRFPAMAVVAASGLAAAAIAAELDAQ 620
Query: 438 EMERALND---VSEPTDNDDLNSFDLADENQMSEDDIEALLSGDEENELLSDGKVDQSLL 494
++ L D EP+ +D ++FDL S DD+EA L+ + + +
Sbjct: 621 YVKDLLLDEPQAPEPSLSDFDSAFDL------SLDDLEAATPISPAIALVPEPTPEPTPA 674
Query: 495 DDLLASELD--ALDDEPAIQDTETLDTLLNDELASLSEEDDDEFDLSGAGVAGDQDLDDL 552
+ LA ELD LDD+ + + T + + L LS+ D D DL G DD
Sbjct: 675 PEALA-ELDEFPLDDDLSFESVLQQQTEIKENLDDLSDFDLD-MDLGGDASPATLAEDDF 732
Query: 553 FASIEEQADLEQLEAKAIDETALLDEILAEQDAPLSEESTELLDELLDDFDKPENDEFDA 612
S++E L ++ + AP++E + + L EL DFD DE DA
Sbjct: 733 LLSLDED----------------LKDLPVAEAAPVTEPTLDDL-ELPADFDLSLADEMDA 775
Query: 613 QTADLLQPEEPILDLEEDSTQL--LNEVLGEP---VPEELASGL-EIDQNSTELLDELLD 666
D QP+ +L + + +L L++ LGEP + LAS E D + DE+
Sbjct: 776 AAPD--QPDAFESELNDVNAELDRLSQSLGEPSFTAEDALASAADEPDFDFLSGTDEVAT 833
Query: 667 DLDLDDESIEATEFSVAPEKLS--VEDGTELFDELLEIEQHPESAESLPELA 716
LDL I+ + A + L+ V +G + Q E+ E L LA
Sbjct: 834 KLDLAQAYIDMGDSDGARDILNEVVTEG--------DAGQKSEAREMLSRLA 877
Score = 62.0 bits (149), Expect = 3e-13
Identities = 160/669 (23%), Positives = 245/669 (36%), Gaps = 124/669 (18%)
Query: 1022 DALADAQLESATESEVESELELVS-------EPAAEEAFTELDELDLPEYTEEDALADSQ 1074
DA A+ E A+ +L LVS + AA +A D+L + E + + D+
Sbjct: 259 DATKRARGEGASSQPAADKLSLVSADTGKGGKGAAGDAKALSDKLAVTEESLDATRRDNA 318
Query: 1075 LEPAAESEVEPELELVSEPVTEEAFTELDELDLPEYTEEDALADAQLEPAVESEVEPELE 1134
+ S+++ +L+ + + EL L + E ADA A E
Sbjct: 319 ELKSRMSDLQSQLDKLQRLI------ELKNNQLAKLQAEGG-ADASASSAPAMSAELAAN 371
Query: 1135 LASEPAEEEASTELNELDLPEYTE-----------EDALADAQL---------------- 1167
A+ PA+ A+T + PE E + L + L
Sbjct: 372 TAATPADASATTSAPQAAAPEAVEPAPATSENQKFNELLTNPILLGLVGGGAVVLLLLLL 431
Query: 1168 ----EPAAESEVESELELASDLEEEEPFTELNELDLPEYTEEDA--------LADAQLEP 1215
A+ E E L +A LEEE+ F+ + DLP + E LA A
Sbjct: 432 LLARRRKAQQEAEKHLRMARALEEEQEFSV--DQDLPPSSFEGLEVPPPSVKLATAPTPA 489
Query: 1216 AVESEVEPELELATEPAEEEAFPELDELDLPEYTEEDALADAQLEPA------AEAEVEP 1269
+ V + + A P + D +D LA AQ A A +E
Sbjct: 490 PAPAPVIAPVVVTPPIAAPLVSPAAERSD----RSDDVLAQAQSHITGGRLNQAAALLED 545
Query: 1270 ELELA---SDLEEK--ETFTELDELDLPEYTEEDALADAQLEPAAESEVEPELELASVLE 1324
++ A SDL K E + + + D E +A+ E E++ +V+
Sbjct: 546 AIKQAPQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGDNFARVE-ELKSRFPAMAVVA 604
Query: 1325 EEDSFTELDELDLPEYTEKDALADAQLEPAAESEVEPELGDETETLAQETESDALVADED 1384
+L KD L D EP A EP L D A + D L A
Sbjct: 605 ASGLAAAAIAAELDAQYVKDLLLD---EPQAP---EPSLSDFDS--AFDLSLDDLEAATP 656
Query: 1385 LLASVESAVDEVQPELLGATQDVPPTQSLANKAFDEEALHDWLSDNPDGEKPFSFDRPLD 1444
+ ++ + V E PE P ++LA DE L D LS ++ LD
Sbjct: 657 ISPAI-ALVPEPTPE------PTPAPEALAE--LDEFPLDDDLSFESVLQQQTEIKENLD 707
Query: 1445 AKTIDSAGMDIDAMLQMGGEDWNGFHLTPDQQAQLPDDVPEDEQAIWASETPEPQAKPEN 1504
D + D+D + +GG+ D L +D+ + P +A P
Sbjct: 708 ----DLSDFDLD--MDLGGDASPATLAEDDFLLSLDEDL---------KDLPVAEAAPVT 752
Query: 1505 WGSQEDL---LDFDPQRDGYMTIDELMAQV-------ESEEQGLNPDEEELKLDVGLDEF 1554
+ +DL DFD DE+ A ESE +N + + L +G F
Sbjct: 753 EPTLDDLELPADFD-----LSLADEMDAAAPDQPDAFESELNDVNAELDRLSQSLGEPSF 807
Query: 1555 P--DVIG---DIRDIDVDSGA-EAAGKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDEIRQ 1608
D + D D D SG E A KLDLA+ YI+M D GA +L E + +GD +
Sbjct: 808 TAEDALASAADEPDFDFLSGTDEVATKLDLAQAYIDMGDSDGARDILNEVVTEGDAGQKS 867
Query: 1609 QAKRLIDVL 1617
+A+ ++ L
Sbjct: 868 EAREMLSRL 876
Score = 41.2 bits (95), Expect = 5e-07
Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 44/336 (13%)
Query: 550 DDLFASIEEQADLEQLEAKAIDETALLDEILAEQDAPLSEESTELLDELLDDFDKP-END 608
DD+ A + +L A ALL++ + + + + ++L +L++ + + + D
Sbjct: 521 DDVLAQAQSHITGGRLNQAA----ALLEDAIKQ-----APQRSDLRLKLMEVYGQQGDRD 571
Query: 609 EFDAQTADLLQPEEPILDLEEDSTQLLNEVLGEPVPEELASGLEIDQNSTELLDELLDDL 668
F AQ L+ + +EE ++ + ASGL + EL + + DL
Sbjct: 572 AFVAQERQLVANGDNFARVEELKSRF------PAMAVVAASGLAAAAIAAELDAQYVKDL 625
Query: 669 DLDDESI---EATEFSVAPEKLSVED---GTELFDELLEI-EQHPESAESLPELATEDEF 721
LD+ ++F A + LS++D T + + + E PE + LA DEF
Sbjct: 626 LLDEPQAPEPSLSDFDSAFD-LSLDDLEAATPISPAIALVPEPTPEPTPAPEALAELDEF 684
Query: 722 NSDTFIDDLLNSAPAKDPLLEPVLDENEAFAQADDFDFNPEIEGGLEDDLSQPSALPANE 781
D DDL + + +L+ + E DFD + ++ G + P+ L ++
Sbjct: 685 PLD---DDL-----SFESVLQQQTEIKENLDDLSDFDLDMDLGGD-----ASPATLAEDD 731
Query: 782 FGTPQDEDWVFDEDDSSPTLEGNAELELSSAEDDLPEQTTATNETADELLADLAAQPQSN 841
F DED P E E + + +LP + ADE+ A QP +
Sbjct: 732 FLLSLDEDL-----KDLPVAEAAPVTEPTLDDLELPADFDLS--LADEMDAAAPDQPDAF 784
Query: 842 TVDTSDDALAPDGLSQSVEEPLTLNDLELPEENDEP 877
+ +D D LSQS+ EP + L DEP
Sbjct: 785 ESELNDVNAELDRLSQSLGEPSFTAEDALASAADEP 820