Pairwise Alignments
Query, 1621 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1110 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 179 bits (455), Expect = 1e-48
Identities = 266/1102 (24%), Positives = 454/1102 (41%), Gaps = 168/1102 (15%)
Query: 30 LLPVAVMVVTQTSFVSA---------ESIRLVGPDGQVQPTPQYSENIVRNSANNEPGRF 80
L+ + V + TSF+ + ++++GPDGQ++ N++
Sbjct: 11 LMATILAVSSTTSFIDPAIAADTPKIKPLKIMGPDGQIR------------QVNHQ---- 54
Query: 81 FGPTSANQTLWSIASQLRPSSSVTVQQTLLAIYQLNPQAFENQNIHTLIPGSTLRVPSLA 140
+GPT++ T WSIA ++RP +SV+V Q + A++ NP AF + + ++L G L +PS
Sbjct: 55 YGPTTSKDTFWSIAQKVRPDASVSVYQVMAAVFDANPHAFNSDSYNSLERGMILLIPSKE 114
Query: 141 QISRNSTQDAVNIMASHQAKLNQTPDTPVRPVAPPRPAP-VATPKVE--AVAQTPPQVTP 197
+ A+ ++ T +PV P P V TP VE + P+ T
Sbjct: 115 VMLSIPNSVAIARAERSDKQVRNTAKVATKPVTKPVTKPVVVTPVVENKPKVEVKPEATK 174
Query: 198 T-TAPQEKAPTELKTPAKP---SQSTDAEVMALEEKNHTLRLMLSQVQ-------SEVST 246
T A E T TP P S + + A E KN +L L++ Q ++V
Sbjct: 175 TEVAKTEVVATPPATPVAPNMASSDVNTRLEAAESKNLSLTDELARAQDQLAVRNADVEA 234
Query: 247 LKEELGDENRIRSEVERLLEEERR-----KAEEASRLAPSALD--------------NLL 287
LK ++ D N+ + +E L+ ++ KAE + APS D NL+
Sbjct: 235 LKAKIEDLNQQIAVLEETLQASKKQNLALKAEVEAAQAPSETDAQPQIPAEPEDVWRNLM 294
Query: 288 SNGWLVALLALIPGLLIAIVVLLLLNRRSSAQQENPTQNNITSEMPTAAPVTLGPEQTED 347
+N L+ A+IP LL+ ++V +L R+ + ++ + +T G
Sbjct: 295 NNPLLLVAAAVIPALLLLLLVFWMLRRKRNKERRELAAQQVA--------MTAGAAGMAT 346
Query: 348 IGDDLLLDDDLFSTTDDKEENDAEKAFSDEDDVFADLNETDLDFNLDGQDSDDLFVGIDD 407
L +DDD D D + A D D D+ L Q+ D +D
Sbjct: 347 GASVLAMDDD--DINDMAVHLDGDHA--DSIDSLLDVGSVSLQ---PEQEMTDGHEQMDI 399
Query: 408 DGDLDTEFDALNESANGISVNADDKALGLEEM-ERALNDVSEPTDNDDLNSFDLADENQM 466
++ + A E+A A+D+ L+++ A+ D E + S N +
Sbjct: 400 ASEMFIDSGASTEAAPQF---AEDEGQSLDDLWAEAMGDQEETFAEEKTKS-----GNIL 451
Query: 467 SEDDIEALLSG---DEENELLSDGKVDQSLLDDLLASELDALDDEPAIQDTETLDTLLND 523
E+D++ALL+G D NE ++ D D+L ++ D + EPA +D+ D
Sbjct: 452 EEEDLDALLAGLGSDVSNEPSTNAASDTENFDEL--ADFD-IPSEPA----AAIDSTDAD 504
Query: 524 ELASLSEEDDDEFDLSGAGVAGDQDLDDLFASIE-EQADLEQLEAKAIDETALL---DEI 579
A+++ E + E + + D D+D L A +A +++A D ALL D+
Sbjct: 505 LAAAIAAELESELENKPSAETADDDIDALLAGFNTSEATDSVTDSEADDLDALLADFDKT 564
Query: 580 LAEQDAPLSEESTELLDELLDDFDKPENDEFDAQTADLLQPEEPILDLEEDSTQLLNEVL 639
AE LS+E LD+ L + + D+ DA AD +P P DL ++ L+ L
Sbjct: 565 PAEATPDLSDEIAAELDDDLAELGVEQTDDIDALLADFDKPVAPEPDLSDEIAAELDVDL 624
Query: 640 GEPVPEELASGLEIDQNSTELLDELLDDLDLDDESIEATEFSVAPEKLSVEDGTEL--FD 697
+I + ++ +D LL LD + ++A E L E TEL D
Sbjct: 625 -----------TDIGVSESDDIDSLLASLDAPIQHDPVVAAAIAAE-LEEELNTELPVSD 672
Query: 698 ELLEIEQHPESAESLPELATEDEFN---SDTFIDDLLNSAP----AKDPLLEPVLDE--- 747
+ L+ +A+ E+ T + N SD +L + P A D L+ +L E
Sbjct: 673 DDLDQLLAGFNAQDTAEVQTPSDINNGHSDEIAAELEATLPEELTAADDDLDSLLAEFDV 732
Query: 748 -NEAFAQADDFDFNPEIEGGLEDDLSQPSALPANEFGTPQDEDWVFDEDDSSPTLEGNAE 806
+A A AD+F+F+ E +D + ++E+ + ++ ++G +
Sbjct: 733 PEQAEADADEFNFDLETTHLDTEDKA-------------EEEEDLLKGIGAAHAIDGTDD 779
Query: 807 -LELSSAEDDLPEQTTATNETADELLADLAAQPQSNTVDTSDDAL-----APDGLSQSVE 860
ELS D + ++ NE DE ++N V+ + L A +
Sbjct: 780 TFELS---DTIADRRDDANEATDEPTFTGFVDNEANNVELATATLTAATAAAAAAKVKEK 836
Query: 861 EPLTLNDLELPEENDEPQLAEVTPSSAFDEQQVETEIEPESEPLA--AEASNDESDLTAL 918
E NDL+ + D L T + +TEI P+ EP+A A D ++A
Sbjct: 837 EASFFNDLKANKSKDPHVLDWDTELNFAPTSSAKTEI-PKPEPVAPVEPAPVDPQAVSAR 895
Query: 919 NELDL----------PEYT----EEDVLADVQLEPAAESEVE---PDLELVNEPVTEEAF 961
L+ P +T ++D + DV L + + + D++L ++ V
Sbjct: 896 QPLEFVLDEPIKKVEPTFTVNTDKDDDIVDVDLGHEFDLKADLDTDDIDLTDDSVLAAFS 955
Query: 962 TELDELDLPEYTEEDALADAQLEPVAESEVEPELDLASEPAEEEAFTELNKLDLPEYTEE 1021
+D D T ED+ A + E LD A E + + F + + DL + E
Sbjct: 956 ANVDIEDEEVLTPEDSFALDDEHTLTVDEALAALD-AQESRKSKKF--VPEHDLTHFQNE 1012
Query: 1022 DALADAQ--LESATESEVESEL 1041
D + L A + VE++L
Sbjct: 1013 HGYIDIEKLLNDAEQDSVETDL 1034
Score = 124 bits (310), Expect = 8e-32
Identities = 197/824 (23%), Positives = 333/824 (40%), Gaps = 109/824 (13%)
Query: 828 DELLADLAAQPQSNTVDTSDDALAPDGLSQSVEEPLT--LNDLELPEEN--DEPQLAEVT 883
D+ + D+A + D+ D L +S E+ +T +++ E D E
Sbjct: 355 DDDINDMAVHLDGDHADSIDSLLDVGSVSLQPEQEMTDGHEQMDIASEMFIDSGASTEAA 414
Query: 884 PSSAFDEQQVETEIEPESEPLAAEASNDESDLTALNELDLPEYTEEDVLADVQLEPAAES 943
P A DE Q + L AEA D+ + A + EE+ L + ++
Sbjct: 415 PQFAEDEGQ-------SLDDLWAEAMGDQEETFAEEKTKSGNILEEEDLDALLAGLGSDV 467
Query: 944 EVEPDLELVNEPVTEEAFTELDELDLPEYTEEDALA----DAQLEPVAESEVEPELDLAS 999
EP N E F EL + D+P E A A DA L +E+E EL+ +
Sbjct: 468 SNEPS---TNAASDTENFDELADFDIP---SEPAAAIDSTDADLAAAIAAELESELE--N 519
Query: 1000 EPAEEEAFTELNKLDLPEYTEEDALADAQLESATESEVESELELVSEPAAEEAFTELDEL 1059
+P+ E A +++ L LA AT+S +SE + +LD L
Sbjct: 520 KPSAETADDDIDAL----------LAGFNTSEATDSVTDSEAD------------DLDAL 557
Query: 1060 DLPEYTEEDALADSQLEPAAESEVEPELELVSEPVTEEAFTELDELDLPEYTEEDALADA 1119
L ++ + A A L +E++ +L + T++ L + D P E D
Sbjct: 558 -LADFDKTPAEATPDLSDEIAAELDDDLAELGVEQTDDIDALLADFDKPVAPEPD----- 611
Query: 1120 QLEPAVESEVEPELELASEPAEEEASTELNELDLPEYTEEDALADAQLEPAAESEVESEL 1179
L + +E++ +L ++ + L LD P + D + A + E E+ +EL
Sbjct: 612 -LSDEIAAELDVDLTDIGVSESDDIDSLLASLDAP--IQHDPVVAAAIAAELEEELNTEL 668
Query: 1180 ELASDLEEEEPFTELNELDLPEYTEEDALADAQLEPAVESEVEPELELATEPAEEEAFPE 1239
++ D + ++ N D E + + + + +E+E L A+++
Sbjct: 669 PVSDD-DLDQLLAGFNAQDTAEVQTPSDINNGHSD-EIAAELEATLPEELTAADDDLDSL 726
Query: 1240 LDELDLPEYTEEDA------LADAQLEPAAEAEVEPELELASDLEEKETFTELDELDLPE 1293
L E D+PE E DA L L+ +AE E +L L+ +D D
Sbjct: 727 LAEFDVPEQAEADADEFNFDLETTHLDTEDKAEEEEDL-----LKGIGAAHAIDGTD-DT 780
Query: 1294 YTEEDALADAQLEPAAESEVEPELELASVLEEEDSFTELDELDLPEYTEKDALADAQLEP 1353
+ D +AD + + A E+ EP ++ E + EL L T A A + +
Sbjct: 781 FELSDTIADRR-DDANEATDEP--TFTGFVDNEANNVELATATLTAATAAAAAAKVKEKE 837
Query: 1354 A-------AESEVEPELGD-ETE-TLAQETESDALVADEDLLASVESAVDEVQPELLGAT 1404
A A +P + D +TE A + + + + +A VE A V P+ + A
Sbjct: 838 ASFFNDLKANKSKDPHVLDWDTELNFAPTSSAKTEIPKPEPVAPVEPA--PVDPQAVSAR 895
Query: 1405 Q-----------DVPPTQSLANKAFDEEALHDWLSDNPDGEKPFSFDRPLDAKTIDSAGM 1453
Q V PT ++ N D++ + + D F LD ID
Sbjct: 896 QPLEFVLDEPIKKVEPTFTV-NTDKDDDIV------DVDLGHEFDLKADLDTDDIDLTDD 948
Query: 1454 DIDAMLQMGGEDWNGFHLTPDQQAQLPDDVPEDEQAIWASETPEPQAKPENWGSQEDLLD 1513
+ A + + LTP+ L D+ A+ + K + + + DL
Sbjct: 949 SVLAAFSANVDIEDEEVLTPEDSFALDDEHTLTVDEALAALDAQESRKSKKFVPEHDLTH 1008
Query: 1514 FDPQRDGYMTIDELM--AQVESEEQGLNPDEEELKLDVGLDEFPDVIGDIRDIDVDSGAE 1571
F + GY+ I++L+ A+ +S E L P+ +DV + + +IGD IDVD
Sbjct: 1009 FQNEH-GYIDIEKLLNDAEQDSVETDLYPE-----MDVEMSDVGALIGDAAMIDVDDEEN 1062
Query: 1572 AA-GKLDLAKIYIEMNDEKGAIKLLEEAIVDGDDEIRQQAKRLI 1614
+ KLDLA+ YIE++D A LL E +DG+D +++A RL+
Sbjct: 1063 SVNAKLDLARAYIEIDDSDSAKALLREVQIDGNDRQQEEAARLL 1106