Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Pseudomonas fluorescens FW300-N2E3

 Score =  416 bits (1068), Expect = e-120
 Identities = 223/507 (43%), Positives = 299/507 (58%), Gaps = 56/507 (11%)

Query: 8   QKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAAGDAIFSQLPLLFGLGIAIGLSKD 67
           Q+LG+ALMLPIA LP+A LLLRLG  DLL I  +  AG  IF+ L L+F +GIA+G ++D
Sbjct: 10  QRLGRALMLPIAILPIAGLLLRLGDTDLLNIAIIHDAGQVIFANLALIFAIGIAVGFARD 69

Query: 68  GSGAAGLAGAVAYFVLSATAKTIDASINMSFFGGIFAGIIAGHSYNAFHTTRLPEWLAFF 127
            +G AGLAGA+ Y V+ +T K +DASINM    GI +G++AG  YN F   +LPE+LAFF
Sbjct: 70  NNGTAGLAGAIGYLVMVSTLKVLDASINMGMLAGIISGLMAGALYNRFKDIKLPEYLAFF 129

Query: 128 AGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGALGQFVYGTLNRALIPV 187
            G+R VPI  G  A+  G + G+IWP IQ G+++    +  SG++G FV+G  NR LI  
Sbjct: 130 GGRRFVPIATGFSAVGLGVIFGLIWPPIQHGINSFGQLLLESGSIGAFVFGVFNRLLIVT 189

Query: 188 GLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPALAKTLVVGQEHTFAFKN 247
           GLHH+LN+  WF  G+                        DP                  
Sbjct: 190 GLHHILNNMAWFIFGSF----------------------TDPT----------------- 210

Query: 248 AVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPA 307
                        T  + +GDL R+F GD   G FM G FP+M+FGLP A LAMY  A  
Sbjct: 211 -------------TGAIVTGDLARYFAGDPKGGQFMTGMFPMMIFGLPAACLAMYRNALP 257

Query: 308 ERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHG 367
           ERR  +GG   S+A  SFLTG+TEP+EF F+FLAP LY +H + TG+++ + N      G
Sbjct: 258 ERRKVMGGIFLSMALTSFLTGVTEPIEFAFMFLAPLLYLLHVLLTGMAMAITNALNIHLG 317

Query: 368 FGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETE 427
           F FS G ID  L WG +T    +F +GLA+  +Y+  F F IR FNLK+PGRE   V   
Sbjct: 318 FTFSGGAIDMALGWGKSTNGWLVFPVGLAYAVIYYVVFDFCIRRFNLKTPGREGVVV--- 374

Query: 428 TDSADASKGDLARQYLKALGGHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVK 487
            +    S+   A  Y++ALGG ENL ++ AC TRLRL + DR+ A ++ LK LGA  VV+
Sbjct: 375 GEKVVLSENQRAGAYIQALGGAENLITVGACTTRLRLEMVDRNKASDSELKALGAMAVVR 434

Query: 488 LGE-NNLQVILGPLAEIVAGEMKAISP 513
            G+  +LQV++GPLA+ +A E++   P
Sbjct: 435 PGKGGSLQVVVGPLADSIADEIRQAMP 461



 Score = 43.1 bits (100), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 439 ARQYLKALGGHENLTSIDA-CITRLRLTLKDRSVADEAVLKKLGAKGVVKLGENNLQVIL 497
           A+++L A+GG +N+  +D   +TR+RL L D     E  LK LG +GV  L      +++
Sbjct: 488 AQKWLNAVGGSDNVLQLDCVAMTRIRLQLADGKALSECQLKDLGCQGVSALDGGVWHLLI 547

Query: 498 GPLAEIVAGEMKAISPKEDLS 518
           G  A  ++  ++ +  + ++S
Sbjct: 548 GDKALSLSEALEGLVNRSEVS 568