Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., PTS system, glucose-like IIB subunint (RefSeq) from Shewanella loihica PV-4

 Score =  165 bits (418), Expect = 3e-45
 Identities = 93/240 (38%), Positives = 137/240 (57%), Gaps = 15/240 (6%)

Query: 267 GDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPAERRHQVGGALFSVAFCSFL 326
           G++ R+  GD  AG    G+  + M+GLP AALA++  A    R++V G + S A   +L
Sbjct: 251 GEVARYLAGDPQAGNLAGGYL-IKMWGLPAAALAIWRCADKHERNRVAGIMLSAATACWL 309

Query: 327 TGITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHGFGFSAGLIDFLLNWGLATK 386
           TG+TEP+EF F+F+AP L+ +HA+ TG++  V       H   FS GL+DF L  G +  
Sbjct: 310 TGVTEPIEFAFMFVAPLLFILHALMTGIAYAVTISLDIHHSVVFSHGLVDFSLLLGQSRN 369

Query: 387 PATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETETDSADASKGDLAR--QYLK 444
                ++G     +Y+  F  AI AFNLK+PGR            +A  G  A     + 
Sbjct: 370 VEWFLILGPLTAVIYYLVFRGAILAFNLKTPGR-----------MEAGSGQRAGLISMIT 418

Query: 445 ALGGHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVKLGENNLQVILGPLAEIV 504
           ALGG +N+  + AC+TRLR+++K   + D+A L KLGAKGVV +G N +Q++ G  AE +
Sbjct: 419 ALGGQDNINELTACLTRLRISVKHAELVDKAQLNKLGAKGVVLVG-NGVQLVYGTKAESI 477



 Score =  105 bits (261), Expect = 5e-27
 Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 34/223 (15%)

Query: 6   YAQKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAA--------AGDAIFSQLPLLFG 57
           +AQ+L +AL+LPIA LP A +++ L       IPF++A         G+ +FS +P+LF 
Sbjct: 26  FAQRLSQALLLPIAILPAAGVMIGLATNP---IPFISADLATLMWTVGNLVFSMMPMLFA 82

Query: 58  LGIAIGLSKDGSGAAGLAGAVAYFV----LSATAK-------------TIDASINMSFFG 100
           + IAIG  +D  G A  +    Y V    LSA AK             TID  I      
Sbjct: 83  VTIAIGFCRD-QGIAAFSAVFGYGVFFSSLSALAKIYHLPTEMILGQATIDTGIAGGMMV 141

Query: 101 GIFAGIIAGHSYNAFHTTRLPEWLAFFAGKRLVPIMAGLFALVAGALSGVIWPSIQGGLD 160
           G F  ++  HS       RLP   +FF G+R  P++    A++   L  ++WP +   ++
Sbjct: 142 GAFTCLVVKHS----ERIRLPAVFSFFEGRRSAPLLMLPMAILLAYLFLLLWPLLSNWIE 197

Query: 161 ALAH-AVSTSGALGQFVYGTLNRALIPVGLHHVLNSYFWFGMG 202
            +++ AV    A    VYG + R LIP+GLHH+ N+ F+  MG
Sbjct: 198 QISNWAVYQEPASAFAVYGMVERLLIPLGLHHIWNAPFYLEMG 240