Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., PTS system, glucose-specific IIBC component (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  237 bits (605), Expect = 7e-67
 Identities = 165/517 (31%), Positives = 259/517 (50%), Gaps = 84/517 (16%)

Query: 6   YAQKLGKALMLPIATLPVAALLLRLG------QPDLLGIPFMAAAGDAIFSQLPLLFGLG 59
           +AQ+L +AL++PIA LP A ++L L        P++L +  M A G  IF+ +P+LF + 
Sbjct: 27  FAQRLSQALLIPIAILPAAGVMLGLTVSPIPFMPEVLNV-LMLAVGKLIFAIMPILFAVA 85

Query: 60  IAIGLSKDGSGAAGLAGAVAYFVLSATAKTID-------------ASINMSFFGGIFAGI 106
           +AIG  +D  G A       Y V++AT   +               +++    GG+  G 
Sbjct: 86  VAIGFCRD-QGIAAFTAVFGYGVMTATLAALADLYQLPTQLVLGMETLDTGIAGGMLIGG 144

Query: 107 IAGHSYNAFHTTRLPEWLAFFAGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAH-A 165
           +   +       RLP   +FF G+R   ++    A+  G +   IWPS+   ++ ++  A
Sbjct: 145 VTCFAVRWSQYIRLPAIFSFFEGRRSASLLIIPLAMGLGYVLAHIWPSLSLLIERVSDWA 204

Query: 166 VSTSGALGQFVYGTLNRALIPVGLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKL 225
           V    A+   VYG L R LIP+GLHH+ N+ F+                           
Sbjct: 205 VYQKPAIAFGVYGALERLLIPLGLHHIWNAPFY--------------------------- 237

Query: 226 CVDPALAKTLVVGQEHTFAFKNAVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNG 285
                    L VGQ   +  ++A             EVV+ G++ R+  GD  AG    G
Sbjct: 238 ---------LEVGQ---YQLQDA-------------EVVR-GEVARYLAGDPQAGNLAGG 271

Query: 286 FFPVMMFGLPGAALAMYLAAPAERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALY 345
           +  + M+GLP AALA++  A    R++V G + S A  S+LTG+TEP+EF F+F+AP L+
Sbjct: 272 YL-IKMWGLPAAALAIWRCADNSERNRVAGIMLSAAAASWLTGVTEPIEFAFMFVAPLLF 330

Query: 346 AMHAVFTGLSLVVANMFGTLHGFGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTF 405
            +H + +GL+  V  M    H   FS GL+DF L + L+       V+G     +Y+  F
Sbjct: 331 LIHVMLSGLAYFVCIMLDIHHSIVFSHGLVDFTLLFSLSRNTGWFAVLGPLTAVIYYILF 390

Query: 406 TFAIRAFNLKSPGREDEEVETETDSADASKGDLARQYLKALGGHENLTSIDACITRLRLT 465
             +I AFNLK+PGR       ++D    SK  L R  + ALGG +N+  ++AC+TRLRL+
Sbjct: 391 RGSILAFNLKTPGR------LQSDGTKGSKESL-RAIIAALGGRDNIVELNACLTRLRLS 443

Query: 466 LKDRSVADEAVLKKLGAKGVVKLGENNLQVILGPLAE 502
           +    + ++  L +LGAKGV+ +G+  +Q++ G  AE
Sbjct: 444 VHSPELVNKVRLSQLGAKGVIVMGK-GVQIVYGTKAE 479