Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., PTS system, N-acetylglucosamine-specific IIBC component from Caulobacter crescentus NA1000

 Score =  357 bits (915), Expect = e-103
 Identities = 228/542 (42%), Positives = 300/542 (55%), Gaps = 100/542 (18%)

Query: 8   QKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAA---------------GDAIFSQL 52
           Q LG+ALMLPIA LPVAALLLR+GQPDLLG P +AAA               G AIF+ L
Sbjct: 9   QPLGRALMLPIAVLPVAALLLRIGQPDLLGAPALAAATHGMSLSVANTFGAAGGAIFASL 68

Query: 53  PLLFGLGIAIGLSKDGSGAAGLAGAVAYFVLS------------ATAKTIDASINMSFFG 100
            L+F +G+A+GL+++  GAAGLAG V Y + +              AK ++ + +++   
Sbjct: 69  GLIFAIGVAVGLARENHGAAGLAGVVCYVIATKGVEALLVAPPEVAAKAVEGAKDLAIAA 128

Query: 101 -------------GIFAGIIAGHSYNAFHTTRLPEWLAFFAGKRLVPIMAGLFALVAGAL 147
                        GI +G+I+G  YN + T +LPE+LAFF G+R VPI+AG        L
Sbjct: 129 WKAKEIGKLSIPVGILSGVISGALYNRYSTIQLPEYLAFFGGRRFVPIVAG--------L 180

Query: 148 SGVIWPSIQGGLDALAHAVSTSGALGQFVYGTLNRALIPVGLHHVLNSYFWFGMGTCQEI 207
           +GV+   + G   +   A    G  G  V  + +  L+  GL                  
Sbjct: 181 AGVVLALLFGAFWSTLEA-GVDGLSG-LVTASGDLGLVVYGL------------------ 220

Query: 208 LVSGAQAAGQALPALEKLCVDPALAKTLVVGQEHTFAFKNAVTPEITAVVKEVTEVVKSG 267
                         L +L +        V G  H     N V   I      VT     G
Sbjct: 221 --------------LNRLLI--------VTGLHHIL---NNVVWFILGDFNGVT-----G 250

Query: 268 DLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPAERRHQVGGALFSVAFCSFLT 327
           DL+RF  GDK+AG FM+GFFPVMMFGLP A LAM   A  ERR  V G L S+A  SFLT
Sbjct: 251 DLNRFAAGDKTAGAFMSGFFPVMMFGLPAACLAMLHTARPERRKAVAGMLGSLALTSFLT 310

Query: 328 GITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHGFGFSAGLIDFLLNWGLATKP 387
           G+TEP+EF F+FLAP L+A+HA+ TGLS+ + NM     GFGFSAGL D++LN+  AT+P
Sbjct: 311 GVTEPIEFTFMFLAPVLFAIHALLTGLSMALMNMLDVKLGFGFSAGLFDYVLNFNKATRP 370

Query: 388 ATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETETDSADASKGDLARQYLKALG 447
             L  +GL + ALY+  F FAI  F+LK+PGREDE     +  A  + G      L ALG
Sbjct: 371 LLLIPVGLVYGALYYGVFRFAILRFDLKTPGREDE--APPSAQAVTTGGGRGADMLAALG 428

Query: 448 GHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVKLGENNLQVILGPLAEIVAGE 507
           G  NL S+DAC TRLRL + D+ + +E  LK LGA+GVV+  +  LQV+LGP+A+ VAGE
Sbjct: 429 GAANLVSVDACTTRLRLIVVDQGLVNEPALKALGARGVVRPSDKALQVVLGPIADTVAGE 488

Query: 508 MK 509
           ++
Sbjct: 489 IR 490



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query: 439 ARQYLKALGGHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVKLGENNLQVILG 498
           A+  L ALGG +NL  +    +RLR+ L D    D+A L   G +G V++GE+   V+LG
Sbjct: 511 AKALLAALGGADNLRDLSVHASRLRVVLNDPQRVDQAALHTAGVRGFVRVGEHAAHVVLG 570

Query: 499 PLAEIVAGEMKAI 511
           P A+ +   ++A+
Sbjct: 571 PEAQRIGQAVRAM 583