Pairwise Alignments

Query, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Burkholderia phytofirmans PsJN

 Score =  449 bits (1154), Expect = e-130
 Identities = 240/513 (46%), Positives = 312/513 (60%), Gaps = 62/513 (12%)

Query: 8   QKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAAGDAIFSQLPLLFGLGIAIGLSKD 67
           Q+LG+ALMLPIA LPVA LLLRLGQPD+  I  +A AG AIF  LPLLF +G+A+G +KD
Sbjct: 10  QRLGRALMLPIAVLPVAGLLLRLGQPDVFNIKMIADAGGAIFDNLPLLFAIGVAVGFAKD 69

Query: 68  GSGAAGLAGAVAYFVLSATAKTIDASINMSFFGGIFAGIIAGHSYNAFHTTRLPEWLAFF 127
            +G AGLAGA+ Y +  A  K I+  +NM    GI AGI+AG  YN +   +LP++LAFF
Sbjct: 70  NNGVAGLAGAIGYLIEVAVMKDINDKLNMGVLSGIVAGIVAGLLYNRYKDIKLPDYLAFF 129

Query: 128 AGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGALGQFVYGTLNRALIPV 187
            GKR VPI+ G+  LV G   G +W  +Q  +D   H ++T+GALG FV+G LNR L+  
Sbjct: 130 GGKRFVPIVTGVVCLVLGIAFGYVWQPVQAVIDTAGHWLTTAGALGAFVFGVLNRLLLVT 189

Query: 188 GLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPALAKTLVVGQEHTFAFKN 247
           GLHH+LNS  WF  GT                                            
Sbjct: 190 GLHHILNSLTWFVFGT-------------------------------------------- 205

Query: 248 AVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPA 307
             TP   A V        +GDLHRFF GD +AG FM GFFPVMMFGLP A LAM+  AP 
Sbjct: 206 -FTPPGGAAV--------TGDLHRFFAGDPTAGTFMTGFFPVMMFGLPAACLAMFHEAPK 256

Query: 308 ERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHG 367
           ERR  VGG LFS+A  SFLTG+TEP+EF F+FLAP LY +HA+ TG+SL + +  G   G
Sbjct: 257 ERRAVVGGLLFSMALTSFLTGVTEPIEFSFMFLAPVLYVIHALLTGISLAICSALGIHLG 316

Query: 368 FGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETE 427
           F FSAG ID++LN+GL+T+      IGL +  +Y+  F F IR FN+ +PGRE    + +
Sbjct: 317 FTFSAGAIDYVLNYGLSTRGWWAIPIGLVYMVVYYGLFRFFIRKFNMATPGREPAAADEQ 376

Query: 428 TDSADA---------SKGDLARQYLKALGGHENLTSIDACITRLRLTLKDRSVADEAVLK 478
            DS  A         +    A++Y+ ALGG  NL+ +DAC TRLRL++ D +   E  LK
Sbjct: 377 VDSFAAGGFVSPVAGTAVPRAQRYIAALGGASNLSVVDACTTRLRLSVVDSNKVSENELK 436

Query: 479 KLGAKGVVKLGENNLQVILGPLAEIVAGEMKAI 511
            +GA+GV+K G  N+QVI+GP A+I+A E++ +
Sbjct: 437 TIGARGVLKRGSTNVQVIIGPEADIIADEIRTV 469