Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family from Xanthomonas campestris pv. campestris strain 8004

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 36/334 (10%)

Query: 19  AVYRLIDQQGPISRIQVADVSQLAPASVTKITRQLLERGLIKEVAQQASTGGRRAISLTT 78
           A+  LI   G ++R  +   S L+      I   L+  GL++         G+ ++ L+ 
Sbjct: 29  ALLDLIRSAGQLARADLPRASGLSVPGTKGIIDPLVAHGLLQLGPSLRRGRGQPSVELSL 88

Query: 79  EVKPFHSIAVRIGRDYIQLSLYDLGGNSLVDEHHEFHYNTQDVLMSSLIKQIKQFIQQHT 138
                 S+ V +  D I + L D  G             T D++ + L + ++Q +Q   
Sbjct: 89  VPDYAFSVGVSLMVDGIAVVLIDFAGQVRGMRQLTAFPLTLDLVAAQLPELVEQLLQAAG 148

Query: 139 ALIDQLIAIGVALPG-------LVNPE-TGVVEYMPNVAINELPLGATIRDEFHVECFVG 190
               +L  +GV++ G        VNP  T   E+M      ++ L   I +   +  ++ 
Sbjct: 149 VDRQRLFGVGVSMTGPRIGDGTRVNPPLTLAAEWM------QVELDRFIAERLQLPVWMD 202

Query: 191 NDVRGIALAEHYFGASQDCQDSILVSVHRGTGAGIIVNGQVFLGYNRNVGEIGHIQIDPL 250
           ND    ALAE  +G  +   D + +++  G  AG+I  G V  G + NVGE+G I     
Sbjct: 203 NDAHCAALAEALYGVGRQSPDLVYLTIADGFAAGVIAAGSVHRGAHGNVGELGRIS---- 258

Query: 251 GEQCQCGNFGCLETVATNPAITSRVQKLIAQGYESSLSTLDTITIDDVCEHANAGDELAK 310
                        T +  P + S  Q L+A G+  +L  L T     + +H +      +
Sbjct: 259 -----------AITGSARPTLESLRQALVADGH--ALPDLHT-----MLQHYDPAWPQIE 300

Query: 311 QALVRVGNQLGKAIAITVNLFNPQKIVIAGQITA 344
             L  V   +  A+A  + L +P+ IV   ++ A
Sbjct: 301 AWLDAVQPTVTLAVAAIIALIDPRVIVFGARLPA 334