Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., ROK family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 79/261 (30%), Positives = 110/261 (42%), Gaps = 66/261 (25%)

Query: 95  IQLSLYDLGG-NSLVDEHHEFH-----YNTQDVLMSSLIKQIKQFIQQHTALIDQLIAIG 148
           +Q    D+GG N L +  HE H     + T D      + +  Q  +Q  AL    +A+ 
Sbjct: 1   MQTLTLDVGGTNGLFELRHEGHTEQYKFPTGDGFSIRDLNEQIQAFEQDFALEHYRLAM- 59

Query: 149 VALPGLVNPETGVVEYMPNVAINELPLGATIRDEFHVEC-----FVGNDV-RGI-ALAEH 201
            A+PGLV            V    LP G T      ++C     F+ ND+  GI A+AE 
Sbjct: 60  -AVPGLVRDNR-------LVTCKSLP-GLTGLHPAQIQCSGELAFIANDMDAGIQAIAE- 109

Query: 202 YFGASQDCQDSILVSVHRGTGAGIIVNGQVFLGYNRNVGEIGHIQIDPLGEQCQCGNFGC 261
                 DC+  +LV    G G  I +NGQVF G +   GE+GH +I   G     G F  
Sbjct: 110 ---PRHDCE--VLVMCGAGLGMAIAMNGQVFSGASGFAGELGHCRIMTEG-----GEFS- 158

Query: 262 LETVATNPAITSRVQKLIAQGYESSLSTLDTITIDDVCEHANAGDELAKQALVRVGNQLG 321
           LE +A+  A+  R Q +                          GD+LA     + G  LG
Sbjct: 159 LEQLASAEALRGRKQVV--------------------------GDDLA-----QAGRHLG 187

Query: 322 KAIAITVNLFNPQKIVIAGQI 342
             +A  VNLFNP +I +AG +
Sbjct: 188 MGLAWVVNLFNPNRIYLAGSM 208