Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., ROK family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 67/274 (24%), Positives = 130/274 (47%), Gaps = 14/274 (5%)

Query: 86  IAVRIGRDYIQLSLYDLGGNSLVDEHHEFHYNTQDVLMSSLIKQIKQFIQQHTALIDQLI 145
           + + +G   I+L   +  GN +V +      + Q  L +     I   + +  + + +  
Sbjct: 4   MGIDLGGTKIELVALNNEGNEVVRKRINTPRDYQGTLNA-----IVDLVNEAESTLGEKG 58

Query: 146 AIGVALPGLVNPETGVVEYMPNVAINELPLGATIRDEFHVECFVGNDVRGIALAEHYFGA 205
           ++GV +PG+++P +G+V+   +  IN  PL   + +    E  V ND    AL+E   GA
Sbjct: 59  SVGVGIPGVISPYSGLVKNANSTWINGHPLDVHLGELLGREVRVANDANCFALSEAVDGA 118

Query: 206 SQDCQDSILVSVHRGTGAGIIVNGQVFLGYNRNVGEIGHIQIDPLGEQ------CQCGNF 259
           +        V +  G GAG+ +NG+V  G N   GE GH  +  + ++      C CGN 
Sbjct: 119 AAGKSVVFGVIIGTGCGAGVAINGKVHAGGNGIGGEWGHNPLPWMTKEEFNTTRCFCGNP 178

Query: 260 GCLETVATNPAITSRVQKLIAQGYESSLSTLDTITIDDVCEHANAGDELAKQALVRVGNQ 319
            C+ET  +         + +++   +S+  +   +  ++    + GDE+A  A  R  ++
Sbjct: 179 DCIETFISGTGFVRDYNEALSRA--ASVQRVPAKSGSEIMSLVDGGDEIALAAFERYVDR 236

Query: 320 LGKAIAITVNLFNPQKIVIAGQITAAKEIVFPAI 353
           L +++A  +NL +P  IV+ G ++   E ++P +
Sbjct: 237 LARSLAHVINLLDPDAIVLGGGMSNV-EAIYPRL 269