Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., ROK family transcriptional repressor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 72.4 bits (176), Expect = 2e-17
 Identities = 62/272 (22%), Positives = 122/272 (44%), Gaps = 25/272 (9%)

Query: 85  SIAVRIGRDYIQLSLYDLGGN--SLVDEHHEFHYNTQDVLMSSLIKQIKQFIQQHTALID 142
           +I V IG   I+  L D+ G    + +      +   ++++  L   I++ IQQ      
Sbjct: 10  AIGVDIGGTKIKAGLVDINGQIIGIPESIRTLAHEPGEMIIEQLTLLIRRMIQQADGA-- 67

Query: 143 QLIAIGVALPGLVNPETGVVEYMPNV-AINELPLGATIRDEFHVECFVGNDVRGIALAEH 201
           +LI IG+   G ++   G++    N+  ++  PL   I   F +   + ND   + L E 
Sbjct: 68  ELIGIGIGSTGPLDINKGIILECNNLPTLHNYPLHKKIESTFGLPVKLDNDANAMMLGEA 127

Query: 202 YFGASQDCQDSILVSVHRGTGAGIIVNGQVFLGYNRNVGEIGHIQIDPLGEQCQCGNFGC 261
            +GA ++    + +++  G GA I+VN ++  G     G  G I + P  E       G 
Sbjct: 128 LWGAGRNLNSILGITLGTGLGAAIVVNRKIIRG---ATGCAGEIWLSPYKE-------GM 177

Query: 262 LETVATNPAITSRVQKLIAQGYESSLSTLDTITIDDVCEHANAGDELAKQALVRVGNQLG 321
           +E   +   I++  Q++          T   I+ +++ + A  GD  A +A       L 
Sbjct: 178 IEDYVSGTGISNLYQRI----------TKRKISGEEISKLAREGDINALKAWKEFTQALA 227

Query: 322 KAIAITVNLFNPQKIVIAGQITAAKEIVFPAI 353
            A++ TVN+ +P+ ++I G +  + +I + ++
Sbjct: 228 YALSWTVNIVDPEVVIIGGSVMHSSDIFWDSM 259