Pairwise Alignments

Query, 404 a.a., N-acetylglucosamine repressor from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., putative xylose repressor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  142 bits (357), Expect = 2e-38
 Identities = 100/360 (27%), Positives = 176/360 (48%), Gaps = 10/360 (2%)

Query: 41  LAPASVTKITRQLLERGLIKEVAQQASTGGRRAISLTTEVKPFHSIAVRIGRDYIQLSLY 100
           L+  +VTK   ++ E G I +  +  ++GGR         +  + I V I R  + + L 
Sbjct: 43  LSVPTVTKFIGEMCEDGYINDYGKLETSGGRHPNLYGLNPESGYFIGVDIKRFAVNIGLI 102

Query: 101 DLGGNSLVDEHHEFHYNTQDVL--MSSLIKQIKQFIQQHTALIDQLIAIGVALPGLVNPE 158
           +  G+ +V+      Y  ++ +  M+ L K I  FI++     ++++ I V + G VNPE
Sbjct: 103 NFKGD-MVELKMNIPYKFENSIEGMNELCKLILNFIKKLPINKEKILNINVNVSGWVNPE 161

Query: 159 TGVVEYMPNVAINELPLGATIRDEFHVECFVGNDVRGIALAEHYFGASQDCQDSILVSVH 218
           +G      N    E PL   + ++   +  + ND R +   E+  G  +  +D I V+V 
Sbjct: 162 SGYSFSQFN--FEERPLADVLSEKLGHKVTIDNDTRAMTYGEYMQGCVKGEKDIIFVNVS 219

Query: 219 RGTGAGIIVNGQVFLGYNRNVGEIGHIQIDPLGEQCQCGNFGCLETVATNPAITSRVQKL 278
            G G GII++G+V+ G +   GE GH+        C CG  GCLET A+  A+   + + 
Sbjct: 220 WGVGIGIIIDGKVYTGKSGFSGEFGHVNAYDNEIICHCGKKGCLETEASGSALHRILLER 279

Query: 279 IAQGYESSLSTL-----DTITIDDVCEHANAGDELAKQALVRVGNQLGKAIAITVNLFNP 333
           I  G  S LST      D IT+D++    N  D L  + +  +G +LGK IA  +N+FNP
Sbjct: 280 IKSGESSILSTRISGEEDPITLDEIITAVNKEDLLCIEIVEEIGQKLGKQIAGLINIFNP 339

Query: 334 QKIVIAGQITAAKEIVFPAIQRNVENQSLKTFHQHLPIVSSQVYKQPTMGAFAMIKRAML 393
           + ++I G ++   + +   I+  V   SL   ++   I++S++  +  +    M+ R+ +
Sbjct: 340 ELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDSAIITSKLKDKAGIVGACMLARSRM 399