Pairwise Alignments

Query, 528 a.a., cation:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., putative TrkA family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  107 bits (266), Expect = 2e-27
 Identities = 140/573 (24%), Positives = 231/573 (40%), Gaps = 69/573 (12%)

Query: 4   ILLSAAFLAGFIALKCHLPPLVGFLIAGFALNAY-GFTSNDTLSL--LADLGVTLLLFTI 60
           + L AA LA  +A +  L  ++G+L+AG A+    G    +T S+   A+ GV L+LF +
Sbjct: 10  VYLLAAVLAVPLAKRLGLGSVLGYLVAGVAIGPLLGLVGQETQSIQHFAEFGVVLMLFLV 69

Query: 61  GLKLEVKTLLAKEIWAGSTIHNLLSTALFTLLLLIFKQLGLDSLADLSFDKLILIGFALS 120
           GL+L+     AK++W       LL      +LL      GL  + +  +   + +G   +
Sbjct: 70  GLELD-----AKQLW--QMRQRLLGLGGLQVLLTTGAVAGLALILNQPWQIALALGMIFA 122

Query: 121 FSSTVFAVKSLQEKGEMNATYGTLAIGILVMQDIFAVVFLT------------------- 161
            SST   ++S  EKG      G     +L+ QDI  +  L                    
Sbjct: 123 MSSTAIVLQSFNEKGLAKTEGGRGGFSVLLFQDIAVIPILAILPLLALSAPQLDAGHEDM 182

Query: 162 ASTGKLPEWYAIGLFVLP-----------LLRPLFYELLDWVGHGEMLVLF-GIFFALVV 209
           +    LP W A  L VL            L RPLF     +V    +  +F      +V+
Sbjct: 183 SLVAGLPAW-ANALVVLGAIAAVVFGGRFLTRPLF----GYVARSGLREVFTAAALMMVI 237

Query: 210 G-AGSFQLVGMKPDLGALILGMMLASHHKASELSKALFNLKELFLVCFFLNIGLSAHPTT 268
           G A    LVG+ P LG  + G++LAS     EL   +   K L L  FF+ +G       
Sbjct: 238 GIAALMSLVGLSPALGTFLAGVVLASSEFRHELESTIEPFKGLLLGLFFITVGAGIDFEM 297

Query: 269 TGIMLALLL---LLLLPIKGVLYFWVIHQFHFRVRTSLLASLSLFNFSEFGLIVGGLAFK 325
                AL+L   L ++ IK ++   +   F        L +LSL    EFG ++ G + +
Sbjct: 298 LLSQFALVLGLALGVMVIKALVLLLLAKIFRLSGSDKWLFALSLAQAGEFGFVLLGYSQQ 357

Query: 326 MGWINSDILVALAVSVPLSFILAAPIERKGHAIYQRSAKWLKEQAAESLHTRDRLIDPGE 385
            G   S++   L++ V LS  L   +      +Y+R    +  +   S + R+      +
Sbjct: 358 QGIFGSELGGLLSMVVALSMFLTPGL----FILYERI---ILPRVTRSTNEREADTIDEQ 410

Query: 386 AQVLILGMGRIGRGAYEELTSRHGEICLGVEIREEAANSHREEGRNVISGDATDPDFWER 445
             V+I G+GR G+     L   +G   + ++         RE       GD ++P+    
Sbjct: 411 GPVIIAGIGRFGQ-IVNRLLRANGVKTVVLDREYAQVERLREIEMKSFFGDVSNPELLHT 469

Query: 446 IFDTGKVKLVLLAMPHHQANQIALEQLQKRHYQGQIAAIAEYPDQIESLLEHGA------ 499
                  K++++A+   +     +  +++++ Q  I A A       +L E GA      
Sbjct: 470 A-GIESAKMLVVAIDDVEGATALVRHVRQQYPQVAILARAFDRGHFYALTEAGADWVVSE 528

Query: 500 --HAAFNIYSEAGTGFARH--VCEQLKPNFTRR 528
             ++A N+  EA      H    EQ K     R
Sbjct: 529 SFYSALNMGGEALIRLGMHPFAAEQRKTAMVER 561