Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 173 a.a., Transcriptional activator RfaH from Pseudomonas fluorescens FW300-N1B4

 Score = 85.1 bits (209), Expect = 5e-22
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 4   WYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFDFEN 63
           WYLL CK  + +RA+++L  Q+   F P++  E+++ GK     EPLFP Y+F+    ++
Sbjct: 10  WYLLQCKPRQDERAQINLLRQNYVIFCPQIISERLIHGKPHQSLEPLFPGYLFIHLSRDD 69

Query: 64  GPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQLKHATKQLPEKGQTVRVAR 123
              +  +RSTRGV   V     P  +  D+I  L+    +       Q  + G T+++ R
Sbjct: 70  --KWAPLRSTRGVSRIVDFNHGPAIVPDDVIEHLRARCLKPPVMHASQPFKPGDTLQITR 127

Query: 124 GQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSIENTD 161
           G  + +E I+L   GD R ++L+  ++++  + +  TD
Sbjct: 128 GPLSTLEGIFLSMLGDERVMILLHFLNREHQVRVPLTD 165