Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 205 a.a., transcription antitermination protein NusG from Synechococcus elongatus PCC 7942

 Score = 43.9 bits (102), Expect = 2e-09
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 26/179 (14%)

Query: 3   RWYLLYCKRGEQQRAKMHLE---------NQSVECFYPEVCVEKILR-GKRQMVQEPLFP 52
           RWY +    G ++R K  LE         N+ ++   PE  + K+ + G RQ  +E +FP
Sbjct: 22  RWYAVQVASGCEKRVKATLEQRVQTLDAANRILQVEIPETPIVKLKKDGSRQSAEEKVFP 81

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQ------LK 106
            Y+ VR   ++  ++  VR+T  V++FV  G   +   G     +K +           K
Sbjct: 82  GYVLVRMILDD-DAWQIVRNTPHVINFV--GAEQKRPYGRGRGHVKPMPLSPGEVGRIFK 138

Query: 107 HATKQLP------EKGQTVRVARGQFAGIEAIYLEPDGDTRSI-MLVKMISQQVPMSIE 158
            A +Q P       +G  + V  G F   E   +E   +   +  L+ +  +  P+ +E
Sbjct: 139 RAQEQKPTVKIDLAEGDQILVLSGPFKDFEGTVIEVSPERSKLKALLSIFGRDTPVELE 197