Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 183 a.a., transcription antitermination protein NusG (RefSeq) from Shewanella amazonensis SB2B

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 2   KRWYLLYCKRGEQQRAKM----HLENQSVECFYPEVCV--EKILR---GKRQMVQEPLFP 52
           KRWY++    G + R       H++   +E ++ EV V  E+++    G+R+  +   FP
Sbjct: 9   KRWYVVQAFSGYEGRVAKSLVEHIKMHGMEQYFGEVLVPTEEVVEMRAGQRRKSERKFFP 68

Query: 53  SYMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPR-----ELQGDLIYQLKQLDCEQLKH 107
            Y+ V+ +  N  S+  V+S   V+ F+  G   R     + + D I +  Q   E   H
Sbjct: 69  GYVLVQMEM-NDDSWHLVKSIPRVMGFIG-GTSDRPAPITDREADAILRRLQETTESPTH 126

Query: 108 ATKQLPEKGQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMI-SQQVPMSIE 158
             + + E G+ VRV  G FA       E D D   + +  MI  +  P+ ++
Sbjct: 127 --RVMYEPGEVVRVVDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELD 176