Pairwise Alignments

Query, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., transcription termination/antitermination protein NusG from Rhodopseudomonas palustris CGA009

 Score = 41.2 bits (95), Expect = 9e-09
 Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 3   RWYLLYCKRG---------EQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPS 53
           RWY+++             ++Q  +  LE+   +   P   V ++ RG++   +   FP 
Sbjct: 4   RWYIVHAYSNFEKKVAESIKEQAKQRGLEDLFEQVLVPTEKVTEVRRGRKVDAERKFFPG 63

Query: 54  YMFVRFDFENGPSFTTVRSTRGVVDFVRLGPHPREL-QGDLIYQLKQLDCEQLKHATKQL 112
           Y+ V+ +  +  +F  +++T  V  F+     P  + + + +  L Q+     +      
Sbjct: 64  YVLVKMNLTD-EAFHLIKNTPKVTGFLGAENKPMPISESEAMRILHQVQEGVERPKASVS 122

Query: 113 PEKGQTVRVARGQFAGIEAIYLEPD-GDTRSIMLVKMISQQVPMSIE 158
            E G+ VRVA G FA    +  E D   +R  + V +  +  P+ +E
Sbjct: 123 FEIGENVRVADGPFASFSGVVEEIDEARSRVKVAVSIFGRATPVELE 169